Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04010

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04005 and CA265_RS04010 are separated by 4 nucleotidesCA265_RS04010 and CA265_RS04015 are separated by 11 nucleotides CA265_RS04005: CA265_RS04005 - hypothetical protein, at 957,220 to 958,779 _RS04005 CA265_RS04010: CA265_RS04010 - hypothetical protein, at 958,784 to 959,728 _RS04010 CA265_RS04015: CA265_RS04015 - ABC transporter ATP-binding protein, at 959,740 to 961,941 _RS04015 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 957.802 kb on - strand, within CA265_RS04005at 957.803 kb on + strand, within CA265_RS04005at 957.803 kb on + strand, within CA265_RS04005at 957.881 kb on + strand, within CA265_RS04005at 957.900 kb on + strand, within CA265_RS04005at 957.900 kb on + strand, within CA265_RS04005at 957.982 kb on - strand, within CA265_RS04005at 958.047 kb on + strand, within CA265_RS04005at 958.048 kb on - strand, within CA265_RS04005at 958.124 kb on + strand, within CA265_RS04005at 958.152 kb on - strand, within CA265_RS04005at 958.271 kb on - strand, within CA265_RS04005at 958.271 kb on - strand, within CA265_RS04005at 958.271 kb on - strandat 958.414 kb on + strand, within CA265_RS04005at 958.427 kb on + strand, within CA265_RS04005at 958.444 kb on + strand, within CA265_RS04005at 958.568 kb on + strand, within CA265_RS04005at 958.572 kb on + strand, within CA265_RS04005at 958.573 kb on - strand, within CA265_RS04005at 958.574 kb on + strand, within CA265_RS04005at 958.696 kb on + strandat 958.697 kb on - strandat 958.749 kb on + strandat 958.781 kb on + strandat 958.789 kb on + strandat 958.807 kb on + strandat 958.833 kb on + strandat 958.833 kb on + strandat 958.833 kb on + strandat 958.834 kb on - strandat 958.932 kb on + strand, within CA265_RS04010at 958.940 kb on + strand, within CA265_RS04010at 958.941 kb on - strand, within CA265_RS04010at 958.942 kb on + strand, within CA265_RS04010at 958.942 kb on + strand, within CA265_RS04010at 958.982 kb on - strand, within CA265_RS04010at 959.015 kb on - strand, within CA265_RS04010at 959.047 kb on + strand, within CA265_RS04010at 959.068 kb on - strand, within CA265_RS04010at 959.090 kb on + strand, within CA265_RS04010at 959.154 kb on + strand, within CA265_RS04010at 959.165 kb on + strand, within CA265_RS04010at 959.180 kb on - strand, within CA265_RS04010at 959.242 kb on - strand, within CA265_RS04010at 959.274 kb on + strand, within CA265_RS04010at 959.291 kb on - strand, within CA265_RS04010at 959.308 kb on - strand, within CA265_RS04010at 959.322 kb on + strand, within CA265_RS04010at 959.396 kb on + strand, within CA265_RS04010at 959.449 kb on + strand, within CA265_RS04010at 959.479 kb on - strand, within CA265_RS04010at 959.489 kb on + strand, within CA265_RS04010at 959.509 kb on + strand, within CA265_RS04010at 959.570 kb on + strand, within CA265_RS04010at 959.571 kb on - strand, within CA265_RS04010at 959.647 kb on - strandat 959.671 kb on - strandat 959.693 kb on + strandat 959.694 kb on - strandat 959.696 kb on - strandat 959.722 kb on + strandat 959.737 kb on + strandat 959.865 kb on - strandat 959.879 kb on + strandat 959.923 kb on - strandat 960.012 kb on - strand, within CA265_RS04015at 960.052 kb on + strand, within CA265_RS04015at 960.052 kb on + strand, within CA265_RS04015at 960.052 kb on + strand, within CA265_RS04015at 960.053 kb on - strand, within CA265_RS04015at 960.053 kb on - strand, within CA265_RS04015at 960.053 kb on - strand, within CA265_RS04015at 960.084 kb on + strand, within CA265_RS04015at 960.084 kb on + strand, within CA265_RS04015at 960.085 kb on - strand, within CA265_RS04015at 960.117 kb on + strand, within CA265_RS04015at 960.126 kb on + strand, within CA265_RS04015at 960.143 kb on + strand, within CA265_RS04015at 960.144 kb on - strand, within CA265_RS04015at 960.164 kb on + strand, within CA265_RS04015at 960.164 kb on + strand, within CA265_RS04015at 960.164 kb on + strand, within CA265_RS04015at 960.238 kb on + strand, within CA265_RS04015at 960.246 kb on + strand, within CA265_RS04015at 960.247 kb on - strand, within CA265_RS04015at 960.284 kb on + strand, within CA265_RS04015at 960.376 kb on + strand, within CA265_RS04015at 960.377 kb on - strand, within CA265_RS04015at 960.381 kb on - strand, within CA265_RS04015at 960.475 kb on - strand, within CA265_RS04015at 960.475 kb on - strand, within CA265_RS04015at 960.633 kb on + strand, within CA265_RS04015at 960.660 kb on - strand, within CA265_RS04015at 960.702 kb on + strand, within CA265_RS04015at 960.706 kb on - strand, within CA265_RS04015at 960.706 kb on - strand, within CA265_RS04015at 960.710 kb on + strand, within CA265_RS04015at 960.710 kb on + strand, within CA265_RS04015at 960.710 kb on + strand, within CA265_RS04015at 960.711 kb on - strand, within CA265_RS04015at 960.712 kb on + strand, within CA265_RS04015at 960.714 kb on + strand, within CA265_RS04015

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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957,802 - CA265_RS04005 0.37 +0.6
957,803 + CA265_RS04005 0.37 -0.9
957,803 + CA265_RS04005 0.37 +0.3
957,881 + CA265_RS04005 0.42 -2.7
957,900 + CA265_RS04005 0.44 -1.5
957,900 + CA265_RS04005 0.44 +0.7
957,982 - CA265_RS04005 0.49 +0.7
958,047 + CA265_RS04005 0.53 -0.1
958,048 - CA265_RS04005 0.53 -0.6
958,124 + CA265_RS04005 0.58 -0.6
958,152 - CA265_RS04005 0.60 +0.3
958,271 - CA265_RS04005 0.67 +0.9
958,271 - CA265_RS04005 0.67 +0.4
958,271 - +2.0
958,414 + CA265_RS04005 0.77 +0.1
958,427 + CA265_RS04005 0.77 -1.7
958,444 + CA265_RS04005 0.78 -2.0
958,568 + CA265_RS04005 0.86 -1.8
958,572 + CA265_RS04005 0.87 -0.8
958,573 - CA265_RS04005 0.87 +0.3
958,574 + CA265_RS04005 0.87 -2.1
958,696 + -2.7
958,697 - -0.9
958,749 + -1.8
958,781 + -1.8
958,789 + -2.1
958,807 + -0.3
958,833 + -0.9
958,833 + -1.6
958,833 + -0.9
958,834 - -0.3
958,932 + CA265_RS04010 0.16 -1.1
958,940 + CA265_RS04010 0.17 -1.8
958,941 - CA265_RS04010 0.17 -0.2
958,942 + CA265_RS04010 0.17 -1.5
958,942 + CA265_RS04010 0.17 -1.5
958,982 - CA265_RS04010 0.21 +0.3
959,015 - CA265_RS04010 0.24 -1.1
959,047 + CA265_RS04010 0.28 -0.2
959,068 - CA265_RS04010 0.30 -0.1
959,090 + CA265_RS04010 0.32 -1.7
959,154 + CA265_RS04010 0.39 -1.9
959,165 + CA265_RS04010 0.40 -0.2
959,180 - CA265_RS04010 0.42 -0.5
959,242 - CA265_RS04010 0.48 -1.3
959,274 + CA265_RS04010 0.52 -1.3
959,291 - CA265_RS04010 0.54 +0.6
959,308 - CA265_RS04010 0.55 -1.2
959,322 + CA265_RS04010 0.57 -1.5
959,396 + CA265_RS04010 0.65 -0.7
959,449 + CA265_RS04010 0.70 -1.8
959,479 - CA265_RS04010 0.74 -0.0
959,489 + CA265_RS04010 0.75 -1.4
959,509 + CA265_RS04010 0.77 -1.4
959,570 + CA265_RS04010 0.83 -0.4
959,571 - CA265_RS04010 0.83 +1.3
959,647 - -0.0
959,671 - +0.1
959,693 + -1.3
959,694 - +1.0
959,696 - +0.4
959,722 + -1.0
959,737 + -0.0
959,865 - -0.3
959,879 + -0.2
959,923 - -0.7
960,012 - CA265_RS04015 0.12 +0.5
960,052 + CA265_RS04015 0.14 -0.5
960,052 + CA265_RS04015 0.14 -0.1
960,052 + CA265_RS04015 0.14 -0.2
960,053 - CA265_RS04015 0.14 +0.4
960,053 - CA265_RS04015 0.14 +0.4
960,053 - CA265_RS04015 0.14 +0.2
960,084 + CA265_RS04015 0.16 -0.4
960,084 + CA265_RS04015 0.16 -0.1
960,085 - CA265_RS04015 0.16 +0.2
960,117 + CA265_RS04015 0.17 +0.3
960,126 + CA265_RS04015 0.18 +0.6
960,143 + CA265_RS04015 0.18 -1.5
960,144 - CA265_RS04015 0.18 +0.5
960,164 + CA265_RS04015 0.19 -0.5
960,164 + CA265_RS04015 0.19 -0.2
960,164 + CA265_RS04015 0.19 -1.2
960,238 + CA265_RS04015 0.23 -1.2
960,246 + CA265_RS04015 0.23 +1.1
960,247 - CA265_RS04015 0.23 -0.3
960,284 + CA265_RS04015 0.25 -2.2
960,376 + CA265_RS04015 0.29 -0.5
960,377 - CA265_RS04015 0.29 +0.2
960,381 - CA265_RS04015 0.29 +0.5
960,475 - CA265_RS04015 0.33 -0.2
960,475 - CA265_RS04015 0.33 -0.3
960,633 + CA265_RS04015 0.41 +0.6
960,660 - CA265_RS04015 0.42 +0.2
960,702 + CA265_RS04015 0.44 -0.8
960,706 - CA265_RS04015 0.44 -0.5
960,706 - CA265_RS04015 0.44 +0.8
960,710 + CA265_RS04015 0.44 -0.9
960,710 + CA265_RS04015 0.44 +1.3
960,710 + CA265_RS04015 0.44 -1.5
960,711 - CA265_RS04015 0.44 +0.8
960,712 + CA265_RS04015 0.44 -0.4
960,714 + CA265_RS04015 0.44 +1.6

Or see this region's nucleotide sequence