Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02825 and CA265_RS02830 are separated by 169 nucleotides CA265_RS02830 and CA265_RS02835 are separated by 163 nucleotides CA265_RS02835 and CA265_RS02840 are separated by 14 nucleotides CA265_RS02840 and CA265_RS02845 are separated by 549 nucleotides
CA265_RS02825: CA265_RS02825 - hypothetical protein, at 711,386 to 711,769
_RS02825
CA265_RS02830: CA265_RS02830 - 30S ribosomal protein S21, at 711,939 to 712,133
_RS02830
CA265_RS02835: CA265_RS02835 - integrase, at 712,297 to 713,181
_RS02835
CA265_RS02840: CA265_RS02840 - 30S ribosomal protein S30, at 713,196 to 713,543
_RS02840
CA265_RS02845: CA265_RS02845 - tRNA-Thr, at 714,093 to 714,165
_RS02845
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 711.300 kb on + strand at 711.305 kb on + strand at 711.306 kb on - strand at 711.307 kb on + strand at 711.308 kb on - strand at 711.308 kb on - strand at 711.336 kb on + strand at 711.336 kb on + strand at 711.387 kb on + strand at 711.387 kb on + strand at 711.387 kb on + strand at 711.387 kb on + strand at 711.395 kb on - strand at 711.407 kb on + strand at 711.462 kb on + strand, within CA265_RS02825 at 711.469 kb on + strand, within CA265_RS02825 at 711.476 kb on + strand, within CA265_RS02825 at 711.612 kb on + strand, within CA265_RS02825 at 711.646 kb on - strand, within CA265_RS02825 at 711.700 kb on - strand, within CA265_RS02825 at 711.717 kb on - strand, within CA265_RS02825 at 711.728 kb on + strand, within CA265_RS02825 at 711.731 kb on - strand at 711.750 kb on - strand at 711.782 kb on - strand at 711.785 kb on + strand at 711.787 kb on + strand at 711.788 kb on - strand at 712.146 kb on + strand at 712.155 kb on + strand at 712.247 kb on + strand at 712.256 kb on + strand at 712.325 kb on + strand at 712.326 kb on - strand at 712.359 kb on + strand at 712.399 kb on - strand, within CA265_RS02835 at 712.408 kb on - strand, within CA265_RS02835 at 712.434 kb on - strand, within CA265_RS02835 at 712.434 kb on - strand, within CA265_RS02835 at 712.457 kb on - strand, within CA265_RS02835 at 712.458 kb on + strand, within CA265_RS02835 at 712.504 kb on - strand, within CA265_RS02835 at 712.572 kb on + strand, within CA265_RS02835 at 712.598 kb on + strand, within CA265_RS02835 at 712.627 kb on - strand, within CA265_RS02835 at 712.845 kb on + strand, within CA265_RS02835 at 712.846 kb on - strand, within CA265_RS02835 at 712.848 kb on + strand, within CA265_RS02835 at 712.865 kb on - strand, within CA265_RS02835 at 712.975 kb on + strand, within CA265_RS02835 at 712.975 kb on + strand, within CA265_RS02835 at 713.033 kb on - strand, within CA265_RS02835 at 713.180 kb on - strand at 713.270 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.317 kb on + strand, within CA265_RS02840 at 713.472 kb on - strand, within CA265_RS02840 at 713.477 kb on + strand, within CA265_RS02840 at 713.538 kb on + strand at 713.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 711,300 + +0.5 711,305 + +0.1 711,306 - +0.3 711,307 + -0.6 711,308 - -0.2 711,308 - +0.5 711,336 + -0.7 711,336 + -0.9 711,387 + +0.0 711,387 + -0.1 711,387 + -0.2 711,387 + -0.1 711,395 - -1.7 711,407 + +0.5 711,462 + CA265_RS02825 0.20 +0.4 711,469 + CA265_RS02825 0.22 -0.2 711,476 + CA265_RS02825 0.23 -0.3 711,612 + CA265_RS02825 0.59 +0.5 711,646 - CA265_RS02825 0.68 -0.2 711,700 - CA265_RS02825 0.82 -0.4 711,717 - CA265_RS02825 0.86 -1.2 711,728 + CA265_RS02825 0.89 -0.4 711,731 - -0.5 711,750 - +0.1 711,782 - +0.1 711,785 + -0.4 711,787 + -0.1 711,788 - -0.5 712,146 + +0.2 712,155 + +0.4 712,247 + -0.5 712,256 + -0.6 712,325 + -0.2 712,326 - -0.6 712,359 + -1.3 712,399 - CA265_RS02835 0.12 -0.8 712,408 - CA265_RS02835 0.13 -0.0 712,434 - CA265_RS02835 0.15 -0.7 712,434 - CA265_RS02835 0.15 -1.8 712,457 - CA265_RS02835 0.18 -1.1 712,458 + CA265_RS02835 0.18 -2.3 712,504 - CA265_RS02835 0.23 +0.6 712,572 + CA265_RS02835 0.31 -1.6 712,598 + CA265_RS02835 0.34 -0.8 712,627 - CA265_RS02835 0.37 -0.8 712,845 + CA265_RS02835 0.62 -1.3 712,846 - CA265_RS02835 0.62 +0.8 712,848 + CA265_RS02835 0.62 -1.4 712,865 - CA265_RS02835 0.64 -0.4 712,975 + CA265_RS02835 0.77 +0.0 712,975 + CA265_RS02835 0.77 -1.7 713,033 - CA265_RS02835 0.83 -2.3 713,180 - +0.4 713,270 + CA265_RS02840 0.21 -0.3 713,275 + CA265_RS02840 0.23 +0.2 713,275 + CA265_RS02840 0.23 +0.1 713,275 + CA265_RS02840 0.23 -0.6 713,317 + CA265_RS02840 0.35 +0.5 713,472 - CA265_RS02840 0.79 +0.4 713,477 + CA265_RS02840 0.81 -0.3 713,538 + +0.1 713,865 - -2.8
Or see this region's nucleotide sequence