Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15945 and BPHYT_RS15950 are separated by 19 nucleotides BPHYT_RS15950 and BPHYT_RS15955 overlap by 4 nucleotides BPHYT_RS15955 and BPHYT_RS15960 are separated by 109 nucleotides
BPHYT_RS15945: BPHYT_RS15945 - AMP-binding protein, at 3,619,157 to 3,620,719
_RS15945
BPHYT_RS15950: BPHYT_RS15950 - tyrosine recombinase XerD, at 3,620,739 to 3,621,674
_RS15950
BPHYT_RS15955: BPHYT_RS15955 - methylated-DNA--protein-cysteine methyltransferase, at 3,621,671 to 3,622,141
_RS15955
BPHYT_RS15960: BPHYT_RS15960 - iron-sulfur cluster binding protein, at 3,622,251 to 3,623,489
_RS15960
Position (kb)
3620
3621
3622 Strain fitness (log2 ratio)
-2
-1
0
1 at 3619.838 kb on + strand, within BPHYT_RS15945 at 3619.893 kb on + strand, within BPHYT_RS15945 at 3619.894 kb on - strand, within BPHYT_RS15945 at 3620.274 kb on + strand, within BPHYT_RS15945 at 3620.275 kb on - strand, within BPHYT_RS15945 at 3620.275 kb on - strand, within BPHYT_RS15945 at 3620.275 kb on - strand, within BPHYT_RS15945 at 3620.306 kb on + strand, within BPHYT_RS15945 at 3620.307 kb on - strand, within BPHYT_RS15945 at 3620.309 kb on + strand, within BPHYT_RS15945 at 3620.405 kb on - strand, within BPHYT_RS15945 at 3620.454 kb on - strand, within BPHYT_RS15945 at 3620.567 kb on - strand at 3620.627 kb on + strand at 3620.628 kb on - strand at 3620.820 kb on - strand at 3620.820 kb on - strand at 3621.186 kb on + strand, within BPHYT_RS15950 at 3621.187 kb on - strand, within BPHYT_RS15950 at 3621.206 kb on - strand, within BPHYT_RS15950 at 3621.248 kb on + strand, within BPHYT_RS15950 at 3621.455 kb on - strand, within BPHYT_RS15950 at 3621.701 kb on + strand at 3621.873 kb on + strand, within BPHYT_RS15955 at 3621.873 kb on + strand, within BPHYT_RS15955 at 3621.874 kb on - strand, within BPHYT_RS15955 at 3621.988 kb on - strand, within BPHYT_RS15955 at 3622.062 kb on + strand, within BPHYT_RS15955 at 3622.190 kb on + strand at 3622.224 kb on - strand at 3622.247 kb on + strand at 3622.329 kb on + strand at 3622.330 kb on - strand at 3622.601 kb on - strand, within BPHYT_RS15960 at 3622.640 kb on + strand, within BPHYT_RS15960 at 3622.641 kb on - strand, within BPHYT_RS15960
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 3,619,838 + BPHYT_RS15945 0.44 -1.1 3,619,893 + BPHYT_RS15945 0.47 -0.7 3,619,894 - BPHYT_RS15945 0.47 -0.5 3,620,274 + BPHYT_RS15945 0.71 +0.7 3,620,275 - BPHYT_RS15945 0.72 -0.3 3,620,275 - BPHYT_RS15945 0.72 +0.5 3,620,275 - BPHYT_RS15945 0.72 -0.6 3,620,306 + BPHYT_RS15945 0.74 -0.3 3,620,307 - BPHYT_RS15945 0.74 +0.4 3,620,309 + BPHYT_RS15945 0.74 +0.7 3,620,405 - BPHYT_RS15945 0.80 -0.1 3,620,454 - BPHYT_RS15945 0.83 -2.1 3,620,567 - -0.4 3,620,627 + -0.2 3,620,628 - -0.6 3,620,820 - -1.2 3,620,820 - -0.8 3,621,186 + BPHYT_RS15950 0.48 -1.5 3,621,187 - BPHYT_RS15950 0.48 -1.2 3,621,206 - BPHYT_RS15950 0.50 -1.3 3,621,248 + BPHYT_RS15950 0.54 -2.1 3,621,455 - BPHYT_RS15950 0.76 -1.5 3,621,701 + -1.4 3,621,873 + BPHYT_RS15955 0.43 +0.1 3,621,873 + BPHYT_RS15955 0.43 -0.5 3,621,874 - BPHYT_RS15955 0.43 +0.7 3,621,988 - BPHYT_RS15955 0.67 -0.1 3,622,062 + BPHYT_RS15955 0.83 -0.6 3,622,190 + +0.3 3,622,224 - +0.2 3,622,247 + +0.5 3,622,329 + -0.9 3,622,330 - -0.4 3,622,601 - BPHYT_RS15960 0.28 -0.5 3,622,640 + BPHYT_RS15960 0.31 -1.2 3,622,641 - BPHYT_RS15960 0.31 +0.1
Or see this region's nucleotide sequence