Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15950

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15945 and BPHYT_RS15950 are separated by 19 nucleotidesBPHYT_RS15950 and BPHYT_RS15955 overlap by 4 nucleotidesBPHYT_RS15955 and BPHYT_RS15960 are separated by 109 nucleotides BPHYT_RS15945: BPHYT_RS15945 - AMP-binding protein, at 3,619,157 to 3,620,719 _RS15945 BPHYT_RS15950: BPHYT_RS15950 - tyrosine recombinase XerD, at 3,620,739 to 3,621,674 _RS15950 BPHYT_RS15955: BPHYT_RS15955 - methylated-DNA--protein-cysteine methyltransferase, at 3,621,671 to 3,622,141 _RS15955 BPHYT_RS15960: BPHYT_RS15960 - iron-sulfur cluster binding protein, at 3,622,251 to 3,623,489 _RS15960 Position (kb) 3620 3621 3622Strain fitness (log2 ratio) -2 -1 0 1at 3619.838 kb on + strand, within BPHYT_RS15945at 3619.893 kb on + strand, within BPHYT_RS15945at 3619.894 kb on - strand, within BPHYT_RS15945at 3620.274 kb on + strand, within BPHYT_RS15945at 3620.275 kb on - strand, within BPHYT_RS15945at 3620.275 kb on - strand, within BPHYT_RS15945at 3620.275 kb on - strand, within BPHYT_RS15945at 3620.306 kb on + strand, within BPHYT_RS15945at 3620.307 kb on - strand, within BPHYT_RS15945at 3620.309 kb on + strand, within BPHYT_RS15945at 3620.405 kb on - strand, within BPHYT_RS15945at 3620.454 kb on - strand, within BPHYT_RS15945at 3620.567 kb on - strandat 3620.627 kb on + strandat 3620.628 kb on - strandat 3620.820 kb on - strandat 3620.820 kb on - strandat 3621.186 kb on + strand, within BPHYT_RS15950at 3621.187 kb on - strand, within BPHYT_RS15950at 3621.206 kb on - strand, within BPHYT_RS15950at 3621.248 kb on + strand, within BPHYT_RS15950at 3621.455 kb on - strand, within BPHYT_RS15950at 3621.701 kb on + strandat 3621.873 kb on + strand, within BPHYT_RS15955at 3621.873 kb on + strand, within BPHYT_RS15955at 3621.874 kb on - strand, within BPHYT_RS15955at 3621.988 kb on - strand, within BPHYT_RS15955at 3622.062 kb on + strand, within BPHYT_RS15955at 3622.190 kb on + strandat 3622.224 kb on - strandat 3622.247 kb on + strandat 3622.329 kb on + strandat 3622.330 kb on - strandat 3622.601 kb on - strand, within BPHYT_RS15960at 3622.640 kb on + strand, within BPHYT_RS15960at 3622.641 kb on - strand, within BPHYT_RS15960

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,619,838 + BPHYT_RS15945 0.44 -1.1
3,619,893 + BPHYT_RS15945 0.47 -0.7
3,619,894 - BPHYT_RS15945 0.47 -0.5
3,620,274 + BPHYT_RS15945 0.71 +0.7
3,620,275 - BPHYT_RS15945 0.72 -0.3
3,620,275 - BPHYT_RS15945 0.72 +0.5
3,620,275 - BPHYT_RS15945 0.72 -0.6
3,620,306 + BPHYT_RS15945 0.74 -0.3
3,620,307 - BPHYT_RS15945 0.74 +0.4
3,620,309 + BPHYT_RS15945 0.74 +0.7
3,620,405 - BPHYT_RS15945 0.80 -0.1
3,620,454 - BPHYT_RS15945 0.83 -2.1
3,620,567 - -0.4
3,620,627 + -0.2
3,620,628 - -0.6
3,620,820 - -1.2
3,620,820 - -0.8
3,621,186 + BPHYT_RS15950 0.48 -1.5
3,621,187 - BPHYT_RS15950 0.48 -1.2
3,621,206 - BPHYT_RS15950 0.50 -1.3
3,621,248 + BPHYT_RS15950 0.54 -2.1
3,621,455 - BPHYT_RS15950 0.76 -1.5
3,621,701 + -1.4
3,621,873 + BPHYT_RS15955 0.43 +0.1
3,621,873 + BPHYT_RS15955 0.43 -0.5
3,621,874 - BPHYT_RS15955 0.43 +0.7
3,621,988 - BPHYT_RS15955 0.67 -0.1
3,622,062 + BPHYT_RS15955 0.83 -0.6
3,622,190 + +0.3
3,622,224 - +0.2
3,622,247 + +0.5
3,622,329 + -0.9
3,622,330 - -0.4
3,622,601 - BPHYT_RS15960 0.28 -0.5
3,622,640 + BPHYT_RS15960 0.31 -1.2
3,622,641 - BPHYT_RS15960 0.31 +0.1

Or see this region's nucleotide sequence