Strain Fitness in Sinorhizobium meliloti 1021 around SMa0525

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0522 and SMa0523 overlap by 20 nucleotidesSMa0523 and SMa0525 overlap by 4 nucleotidesSMa0525 and SMa0526 overlap by 4 nucleotides SMa0522: SMa0522 - ABC transporter substrate-binding protein, at 281,664 to 282,392 SMa0522 SMa0523: SMa0523 - ABC transporter substrate-binding protein, at 282,373 to 282,777 SMa0523 SMa0525: SMa0525 - ABC transporter permease, at 282,774 to 284,579 SMa0525 SMa0526: SMa0526 - maltose/trehalose ABC transporter, at 284,576 to 285,622 SMa0526 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 281.793 kb on + strand, within SMa0522at 281.794 kb on - strand, within SMa0522at 281.794 kb on - strand, within SMa0522at 281.844 kb on + strand, within SMa0522at 281.873 kb on + strand, within SMa0522at 281.873 kb on + strand, within SMa0522at 281.874 kb on - strand, within SMa0522at 281.946 kb on + strand, within SMa0522at 282.006 kb on + strand, within SMa0522at 282.006 kb on + strand, within SMa0522at 282.006 kb on + strand, within SMa0522at 282.006 kb on + strand, within SMa0522at 282.007 kb on - strand, within SMa0522at 282.007 kb on - strand, within SMa0522at 282.007 kb on - strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.093 kb on + strand, within SMa0522at 282.095 kb on + strand, within SMa0522at 282.095 kb on + strand, within SMa0522at 282.251 kb on + strand, within SMa0522at 282.258 kb on + strand, within SMa0522at 282.259 kb on - strand, within SMa0522at 282.269 kb on - strand, within SMa0522at 282.328 kb on + strandat 282.328 kb on + strandat 282.328 kb on + strandat 282.328 kb on + strandat 282.328 kb on + strandat 282.329 kb on - strandat 282.329 kb on - strandat 282.329 kb on - strandat 282.390 kb on + strandat 282.390 kb on + strandat 282.430 kb on + strand, within SMa0523at 282.479 kb on + strand, within SMa0523at 282.510 kb on - strand, within SMa0523at 282.510 kb on - strand, within SMa0523at 282.532 kb on - strand, within SMa0523at 282.571 kb on - strand, within SMa0523at 282.628 kb on + strand, within SMa0523at 282.628 kb on + strand, within SMa0523at 282.628 kb on + strand, within SMa0523at 282.629 kb on - strand, within SMa0523at 282.629 kb on - strand, within SMa0523at 282.839 kb on + strandat 282.840 kb on - strandat 282.840 kb on - strandat 282.840 kb on - strandat 282.943 kb on + strandat 283.046 kb on + strand, within SMa0525at 283.047 kb on - strand, within SMa0525at 283.049 kb on + strand, within SMa0525at 283.049 kb on + strand, within SMa0525at 283.050 kb on - strand, within SMa0525at 283.050 kb on - strand, within SMa0525at 283.050 kb on - strand, within SMa0525at 283.050 kb on - strand, within SMa0525at 283.273 kb on - strand, within SMa0525at 283.332 kb on + strand, within SMa0525at 283.332 kb on + strand, within SMa0525at 283.336 kb on - strand, within SMa0525at 283.336 kb on - strand, within SMa0525at 283.350 kb on - strand, within SMa0525at 283.443 kb on - strand, within SMa0525at 283.448 kb on - strand, within SMa0525at 283.576 kb on - strand, within SMa0525at 283.611 kb on + strand, within SMa0525at 283.612 kb on - strand, within SMa0525at 283.786 kb on + strand, within SMa0525at 283.827 kb on - strand, within SMa0525at 284.121 kb on + strand, within SMa0525at 284.122 kb on - strand, within SMa0525at 284.167 kb on - strand, within SMa0525at 284.205 kb on + strand, within SMa0525at 284.205 kb on + strand, within SMa0525at 284.254 kb on + strand, within SMa0525at 284.347 kb on + strand, within SMa0525at 284.440 kb on + strandat 284.449 kb on - strandat 284.455 kb on - strandat 284.580 kb on + strandat 284.581 kb on - strandat 284.581 kb on - strandat 284.615 kb on + strandat 284.616 kb on - strandat 284.635 kb on - strandat 284.704 kb on - strand, within SMa0526at 284.715 kb on + strand, within SMa0526at 284.837 kb on + strand, within SMa0526at 284.837 kb on + strand, within SMa0526at 284.837 kb on + strand, within SMa0526at 284.838 kb on - strand, within SMa0526at 284.838 kb on - strand, within SMa0526at 284.855 kb on - strand, within SMa0526at 285.152 kb on + strand, within SMa0526at 285.152 kb on + strand, within SMa0526at 285.153 kb on - strand, within SMa0526at 285.190 kb on + strand, within SMa0526at 285.321 kb on + strand, within SMa0526at 285.333 kb on - strand, within SMa0526at 285.446 kb on + strand, within SMa0526

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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281,793 + SMa0522 0.18 -0.1
281,794 - SMa0522 0.18 +0.3
281,794 - SMa0522 0.18 -0.5
281,844 + SMa0522 0.25 +0.8
281,873 + SMa0522 0.29 +1.3
281,873 + SMa0522 0.29 -0.1
281,874 - SMa0522 0.29 +0.6
281,946 + SMa0522 0.39 +0.9
282,006 + SMa0522 0.47 -0.3
282,006 + SMa0522 0.47 +1.2
282,006 + SMa0522 0.47 -0.9
282,006 + SMa0522 0.47 -1.8
282,007 - SMa0522 0.47 +0.1
282,007 - SMa0522 0.47 +0.1
282,007 - SMa0522 0.47 -0.4
282,093 + SMa0522 0.59 -0.0
282,093 + SMa0522 0.59 -1.5
282,093 + SMa0522 0.59 -0.3
282,093 + SMa0522 0.59 -0.2
282,093 + SMa0522 0.59 +0.2
282,093 + SMa0522 0.59 +0.7
282,093 + SMa0522 0.59 -0.2
282,095 + SMa0522 0.59 +0.7
282,095 + SMa0522 0.59 -0.3
282,251 + SMa0522 0.81 +5.2
282,258 + SMa0522 0.81 -0.5
282,259 - SMa0522 0.82 +0.3
282,269 - SMa0522 0.83 -0.5
282,328 + -0.6
282,328 + -0.3
282,328 + -0.2
282,328 + -0.6
282,328 + +0.3
282,329 - +0.5
282,329 - +0.7
282,329 - -0.5
282,390 + +0.4
282,390 + -0.4
282,430 + SMa0523 0.14 +0.4
282,479 + SMa0523 0.26 -0.3
282,510 - SMa0523 0.34 -0.4
282,510 - SMa0523 0.34 -0.2
282,532 - SMa0523 0.39 -0.8
282,571 - SMa0523 0.49 -1.0
282,628 + SMa0523 0.63 -0.3
282,628 + SMa0523 0.63 +0.3
282,628 + SMa0523 0.63 -1.0
282,629 - SMa0523 0.63 -1.4
282,629 - SMa0523 0.63 -0.1
282,839 + +0.3
282,840 - -0.1
282,840 - -0.4
282,840 - -0.2
282,943 + +0.7
283,046 + SMa0525 0.15 +0.3
283,047 - SMa0525 0.15 +0.1
283,049 + SMa0525 0.15 -0.1
283,049 + SMa0525 0.15 +1.2
283,050 - SMa0525 0.15 +0.1
283,050 - SMa0525 0.15 +0.1
283,050 - SMa0525 0.15 +0.4
283,050 - SMa0525 0.15 +0.1
283,273 - SMa0525 0.28 +1.3
283,332 + SMa0525 0.31 -1.3
283,332 + SMa0525 0.31 -0.3
283,336 - SMa0525 0.31 +0.7
283,336 - SMa0525 0.31 +0.4
283,350 - SMa0525 0.32 -0.0
283,443 - SMa0525 0.37 -0.7
283,448 - SMa0525 0.37 +0.4
283,576 - SMa0525 0.44 -0.4
283,611 + SMa0525 0.46 -1.6
283,612 - SMa0525 0.46 -0.1
283,786 + SMa0525 0.56 -0.8
283,827 - SMa0525 0.58 -1.6
284,121 + SMa0525 0.75 +0.7
284,122 - SMa0525 0.75 -0.7
284,167 - SMa0525 0.77 -1.3
284,205 + SMa0525 0.79 -0.8
284,205 + SMa0525 0.79 +0.4
284,254 + SMa0525 0.82 -0.3
284,347 + SMa0525 0.87 +0.1
284,440 + +0.9
284,449 - +0.6
284,455 - +1.1
284,580 + -0.1
284,581 - -0.3
284,581 - +0.6
284,615 + +1.2
284,616 - -0.0
284,635 - -0.1
284,704 - SMa0526 0.12 -0.9
284,715 + SMa0526 0.13 -0.3
284,837 + SMa0526 0.25 +5.2
284,837 + SMa0526 0.25 +1.2
284,837 + SMa0526 0.25 -0.3
284,838 - SMa0526 0.25 -0.1
284,838 - SMa0526 0.25 +0.1
284,855 - SMa0526 0.27 -0.7
285,152 + SMa0526 0.55 +0.2
285,152 + SMa0526 0.55 +0.4
285,153 - SMa0526 0.55 -0.2
285,190 + SMa0526 0.59 +0.7
285,321 + SMa0526 0.71 -1.0
285,333 - SMa0526 0.72 +0.1
285,446 + SMa0526 0.83 -0.6

Or see this region's nucleotide sequence