Strain Fitness in Pseudomonas sp. RS175 around PFR28_03384

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
3,893,051	+		PFR28_03383	0.80	-2.2
3,893,051	+		PFR28_03383	0.80	-1.5
3,893,051	+		PFR28_03383	0.80	+1.1
3,893,051	+		PFR28_03383	0.80	+0.7
3,893,051	+		PFR28_03383	0.80	-0.3
3,893,051	+		PFR28_03383	0.80	+0.7
3,893,051	+		PFR28_03383	0.80	-0.6
3,893,051	+		PFR28_03383	0.80	+0.1
3,893,051	+		PFR28_03383	0.80	-1.4
3,893,052	-		PFR28_03383	0.80	+0.6
3,893,052	-		PFR28_03383	0.80	+0.1
3,893,052	-		PFR28_03383	0.80	+0.6
3,893,052	-		PFR28_03383	0.80	-1.2
3,893,052	-		PFR28_03383	0.80	+0.6
3,893,052	-		PFR28_03383	0.80	-0.2
3,893,052	-		PFR28_03383	0.80	-0.4
3,893,117	+		PFR28_03383	0.82	+0.2
3,893,117	+		PFR28_03383	0.82	-1.6
3,893,117	+		PFR28_03383	0.82	-1.7
3,893,117	+		PFR28_03383	0.82	-0.9
3,893,117	+		PFR28_03383	0.82	-0.0
3,893,117	+		PFR28_03383	0.82	-2.0
3,893,117	+		PFR28_03383	0.82	+1.0
3,893,118	-		PFR28_03383	0.82	+0.4
3,893,118	-		PFR28_03383	0.82	-0.1
3,893,118	-		PFR28_03383	0.82	+0.4
3,893,118	-		PFR28_03383	0.82	+1.2
3,893,118	-		PFR28_03383	0.82	+1.0
3,893,144	+		PFR28_03383	0.83	+0.1
3,893,489	+				-0.3
3,893,540	+				-1.0
3,893,540	+				-0.6
3,893,541	-				+0.2
3,893,541	-				-0.7
3,893,553	+				-1.2
3,893,618	+				-0.5
3,893,618	+				+0.7
3,893,618	+				+0.9
3,893,618	+				-0.7
3,893,619	-				+1.2
3,893,619	-				+0.6
3,893,619	-				-0.4
3,893,619	-				+0.2
3,893,761	+				-0.4
3,893,857	-				-1.1
3,893,857	-				+0.8
3,893,857	-				+0.7
3,893,950	+		PFR28_03384	0.11	+0.1
3,893,951	-		PFR28_03384	0.11	+0.0
3,894,230	-		PFR28_03384	0.31	-0.2
3,894,230	-		PFR28_03384	0.31	-0.8
3,894,230	-		PFR28_03384	0.31	+1.0
3,894,230	-		PFR28_03384	0.31	+2.3
3,894,230	-		PFR28_03384	0.31	+1.4
3,894,358	+		PFR28_03384	0.41	+0.6
3,894,358	+		PFR28_03384	0.41	+0.1
3,894,358	+		PFR28_03384	0.41	+0.4
3,894,358	+		PFR28_03384	0.41	+0.6
3,894,358	+		PFR28_03384	0.41	+0.1
3,894,358	+		PFR28_03384	0.41	+0.1
3,894,358	+		PFR28_03384	0.41	+0.9
3,894,359	-		PFR28_03384	0.41	+0.4
3,894,359	-		PFR28_03384	0.41	+1.8
3,894,359	-		PFR28_03384	0.41	+0.2
3,894,359	-		PFR28_03384	0.41	+0.9
3,894,359	-		PFR28_03384	0.41	+2.0
3,894,359	-		PFR28_03384	0.41	+0.6
3,894,610	+		PFR28_03384	0.59	+1.1
3,894,611	-		PFR28_03384	0.59	+0.0
3,894,611	-		PFR28_03384	0.59	-0.5
3,894,611	-		PFR28_03384	0.59	+2.3
3,894,706	+		PFR28_03384	0.66	+0.3
3,894,706	+		PFR28_03384	0.66	-0.1
3,894,706	+		PFR28_03384	0.66	+0.1
3,894,706	+		PFR28_03384	0.66	-0.0
3,894,706	+		PFR28_03384	0.66	-0.1
3,894,707	-		PFR28_03384	0.66	+2.3
3,894,707	-		PFR28_03384	0.66	+0.1
3,894,707	-		PFR28_03384	0.66	-0.2
3,894,707	-		PFR28_03384	0.66	-0.8
3,894,707	-		PFR28_03384	0.66	-1.2
3,894,709	+		PFR28_03384	0.66	+0.4
3,894,709	+		PFR28_03384	0.66	+0.7
3,894,709	+		PFR28_03384	0.66	-0.5
3,894,709	+		PFR28_03384	0.66	+0.4
3,894,709	+		PFR28_03384	0.66	-1.0
3,894,709	+		PFR28_03384	0.66	+0.5
3,894,709	+		PFR28_03384	0.66	+1.3
3,894,709	+		PFR28_03384	0.66	-0.4
3,894,709	+		PFR28_03384	0.66	-1.4
3,894,709	+		PFR28_03384	0.66	+0.2
3,894,710	-		PFR28_03384	0.66	-1.1
3,894,710	-		PFR28_03384	0.66	-1.2
3,894,710	-		PFR28_03384	0.66	-0.1
3,894,710	-		PFR28_03384	0.66	+1.2
3,894,710	-		PFR28_03384	0.66	+0.8
3,894,710	-		PFR28_03384	0.66	+0.9
3,894,710	-		PFR28_03384	0.66	-2.0
3,894,710	-		PFR28_03384	0.66	+0.7
3,894,710	-		PFR28_03384	0.66	-0.7
3,894,710	-		PFR28_03384	0.66	-0.3
3,894,710	-		PFR28_03384	0.66	+1.1
3,894,710	-		PFR28_03384	0.66	-1.1
3,894,710	-		PFR28_03384	0.66	-0.1
3,894,710	-		PFR28_03384	0.66	-1.0
3,894,710	-		PFR28_03384	0.66	+0.1
3,894,710	-		PFR28_03384	0.66	-0.6
3,894,710	-		PFR28_03384	0.66	-2.8
3,894,710	-		PFR28_03384	0.66	-0.5
3,894,787	+		PFR28_03384	0.72	+0.4
3,894,787	+		PFR28_03384	0.72	+0.2
3,894,788	-		PFR28_03384	0.72	-0.3
3,894,788	-		PFR28_03384	0.72	-1.4
3,894,788	-		PFR28_03384	0.72	+0.6
3,894,788	-		PFR28_03384	0.72	-2.0
3,894,788	-		PFR28_03384	0.72	+0.5
3,894,788	-		PFR28_03384	0.72	+0.8
3,894,896	+		PFR28_03384	0.80	+1.0
3,894,896	+		PFR28_03384	0.80	-0.6
3,894,896	+		PFR28_03384	0.80	-3.2
3,894,897	-		PFR28_03384	0.80	-2.7
3,894,897	-		PFR28_03384	0.80	-0.4
3,895,031	+		PFR28_03384	0.89	-1.9
3,895,031	+		PFR28_03384	0.89	-0.1
3,895,032	-		PFR28_03384	0.89	-0.9
3,895,077	+				+1.7
3,895,126	+				+1.9
3,895,126	+				-2.6
3,895,127	-				+0.8
3,895,127	-				+1.4
3,895,217	+				-0.6
3,895,217	+				-2.3
3,895,217	+				+0.6
3,895,218	-				+1.0
3,895,218	-				+1.1
3,895,218	-				+0.6
3,895,218	-				+0.0
3,895,218	-				-0.2
3,895,299	+				-0.9
3,895,300	-				-0.4
3,895,483	-		PFR28_03385	0.24	-1.1
3,895,791	+		PFR28_03385	0.51	+0.8
3,895,792	-		PFR28_03385	0.51	-1.0
3,895,935	+		PFR28_03385	0.64	-3.0
3,895,935	+		PFR28_03385	0.64	-3.2
3,895,936	-		PFR28_03385	0.64	+0.3
3,895,969	+		PFR28_03385	0.67	-0.1
3,896,077	+		PFR28_03385	0.76	-0.2
3,896,078	-		PFR28_03385	0.76	-0.0
3,896,078	-		PFR28_03385	0.76	-0.2
3,896,078	-		PFR28_03385	0.76	+0.7