Strain Fitness in Pseudomonas sp. RS175 around PFR28_03382

Experiment: Choline (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03381 and PFR28_03382 are separated by 466 nucleotidesPFR28_03382 and PFR28_03383 are separated by 11 nucleotides PFR28_03381: PFR28_03381 - Transcriptional regulatory protein TyrR, at 3,888,407 to 3,889,915 _03381 PFR28_03382: PFR28_03382 - Glycine cleavage system H protein, at 3,890,382 to 3,890,765 _03382 PFR28_03383: PFR28_03383 - Glycine dehydrogenase (decarboxylating), at 3,890,777 to 3,893,626 _03383 Position (kb) 3890 3891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.389 kb on + strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.390 kb on - strand, within PFR28_03381at 3889.463 kb on + strand, within PFR28_03381at 3889.463 kb on + strand, within PFR28_03381at 3889.463 kb on + strand, within PFR28_03381at 3889.464 kb on - strand, within PFR28_03381at 3889.538 kb on + strand, within PFR28_03381at 3889.538 kb on + strand, within PFR28_03381at 3889.539 kb on - strand, within PFR28_03381at 3889.539 kb on - strand, within PFR28_03381at 3889.811 kb on + strandat 3889.811 kb on + strandat 3889.812 kb on - strandat 3889.812 kb on - strandat 3889.812 kb on - strandat 3889.820 kb on + strandat 3889.820 kb on + strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.821 kb on - strandat 3889.892 kb on + strandat 3889.893 kb on - strandat 3889.914 kb on - strandat 3889.914 kb on - strandat 3890.190 kb on - strandat 3890.445 kb on - strand, within PFR28_03382at 3890.520 kb on + strand, within PFR28_03382at 3890.520 kb on + strand, within PFR28_03382at 3890.520 kb on + strand, within PFR28_03382at 3890.521 kb on - strand, within PFR28_03382at 3890.521 kb on - strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.577 kb on + strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.578 kb on - strand, within PFR28_03382at 3890.681 kb on + strand, within PFR28_03382at 3890.681 kb on + strand, within PFR28_03382at 3890.708 kb on + strand, within PFR28_03382at 3890.708 kb on + strand, within PFR28_03382at 3890.709 kb on - strand, within PFR28_03382at 3890.730 kb on + strandat 3891.017 kb on + strandat 3891.017 kb on + strandat 3891.017 kb on + strandat 3891.017 kb on + strandat 3891.017 kb on + strandat 3891.017 kb on + strandat 3891.018 kb on - strandat 3891.018 kb on - strandat 3891.018 kb on - strandat 3891.018 kb on - strandat 3891.018 kb on - strandat 3891.018 kb on - strandat 3891.032 kb on + strandat 3891.033 kb on - strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.035 kb on + strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.036 kb on - strandat 3891.092 kb on + strand, within PFR28_03383at 3891.092 kb on + strand, within PFR28_03383at 3891.093 kb on - strand, within PFR28_03383at 3891.101 kb on + strand, within PFR28_03383at 3891.101 kb on + strand, within PFR28_03383at 3891.102 kb on - strand, within PFR28_03383at 3891.102 kb on - strand, within PFR28_03383at 3891.102 kb on - strand, within PFR28_03383at 3891.332 kb on - strand, within PFR28_03383at 3891.367 kb on - strand, within PFR28_03383at 3891.623 kb on + strand, within PFR28_03383at 3891.623 kb on + strand, within PFR28_03383at 3891.624 kb on - strand, within PFR28_03383at 3891.739 kb on + strand, within PFR28_03383at 3891.739 kb on + strand, within PFR28_03383at 3891.740 kb on - strand, within PFR28_03383

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline (C) 10 mM
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3,889,389 + PFR28_03381 0.65 -0.5
3,889,389 + PFR28_03381 0.65 -0.2
3,889,389 + PFR28_03381 0.65 -0.0
3,889,389 + PFR28_03381 0.65 +0.3
3,889,389 + PFR28_03381 0.65 -4.4
3,889,389 + PFR28_03381 0.65 +0.3
3,889,389 + PFR28_03381 0.65 -1.9
3,889,389 + PFR28_03381 0.65 -0.0
3,889,389 + PFR28_03381 0.65 -0.7
3,889,389 + PFR28_03381 0.65 -0.2
3,889,390 - PFR28_03381 0.65 +1.2
3,889,390 - PFR28_03381 0.65 +0.6
3,889,390 - PFR28_03381 0.65 -0.7
3,889,390 - PFR28_03381 0.65 -1.0
3,889,390 - PFR28_03381 0.65 +1.7
3,889,390 - PFR28_03381 0.65 +0.3
3,889,390 - PFR28_03381 0.65 +0.4
3,889,390 - PFR28_03381 0.65 -0.6
3,889,390 - PFR28_03381 0.65 +1.6
3,889,390 - PFR28_03381 0.65 +1.3
3,889,390 - PFR28_03381 0.65 -1.9
3,889,463 + PFR28_03381 0.70 +0.4
3,889,463 + PFR28_03381 0.70 +0.1
3,889,463 + PFR28_03381 0.70 -1.9
3,889,464 - PFR28_03381 0.70 +0.2
3,889,538 + PFR28_03381 0.75 -2.1
3,889,538 + PFR28_03381 0.75 -0.4
3,889,539 - PFR28_03381 0.75 +0.7
3,889,539 - PFR28_03381 0.75 -0.5
3,889,811 + -0.1
3,889,811 + -0.2
3,889,812 - -1.9
3,889,812 - -0.4
3,889,812 - -2.3
3,889,820 + -0.7
3,889,820 + +0.1
3,889,821 - +0.4
3,889,821 - -1.4
3,889,821 - +0.5
3,889,821 - -0.2
3,889,821 - +0.2
3,889,821 - -0.4
3,889,821 - -0.2
3,889,892 + -3.0
3,889,893 - +0.9
3,889,914 - -0.2
3,889,914 - +0.1
3,890,190 - -0.8
3,890,445 - PFR28_03382 0.16 -0.6
3,890,520 + PFR28_03382 0.36 -0.8
3,890,520 + PFR28_03382 0.36 -0.4
3,890,520 + PFR28_03382 0.36 -0.1
3,890,521 - PFR28_03382 0.36 -0.4
3,890,521 - PFR28_03382 0.36 +0.2
3,890,577 + PFR28_03382 0.51 -1.5
3,890,577 + PFR28_03382 0.51 -0.8
3,890,577 + PFR28_03382 0.51 -0.4
3,890,577 + PFR28_03382 0.51 +0.9
3,890,577 + PFR28_03382 0.51 -1.2
3,890,577 + PFR28_03382 0.51 +0.4
3,890,577 + PFR28_03382 0.51 +1.1
3,890,577 + PFR28_03382 0.51 -0.8
3,890,577 + PFR28_03382 0.51 +0.6
3,890,577 + PFR28_03382 0.51 -0.5
3,890,577 + PFR28_03382 0.51 -0.9
3,890,577 + PFR28_03382 0.51 +0.9
3,890,577 + PFR28_03382 0.51 -0.3
3,890,577 + PFR28_03382 0.51 +0.7
3,890,577 + PFR28_03382 0.51 -1.1
3,890,577 + PFR28_03382 0.51 -0.2
3,890,578 - PFR28_03382 0.51 +1.3
3,890,578 - PFR28_03382 0.51 -0.8
3,890,578 - PFR28_03382 0.51 +0.4
3,890,578 - PFR28_03382 0.51 +2.6
3,890,578 - PFR28_03382 0.51 -0.5
3,890,578 - PFR28_03382 0.51 -0.1
3,890,578 - PFR28_03382 0.51 -0.5
3,890,578 - PFR28_03382 0.51 -1.6
3,890,578 - PFR28_03382 0.51 -0.9
3,890,578 - PFR28_03382 0.51 +0.3
3,890,578 - PFR28_03382 0.51 +0.5
3,890,578 - PFR28_03382 0.51 +0.5
3,890,578 - PFR28_03382 0.51 -0.4
3,890,578 - PFR28_03382 0.51 +0.1
3,890,578 - PFR28_03382 0.51 +0.1
3,890,578 - PFR28_03382 0.51 -0.0
3,890,681 + PFR28_03382 0.78 +0.7
3,890,681 + PFR28_03382 0.78 +0.4
3,890,708 + PFR28_03382 0.85 -0.7
3,890,708 + PFR28_03382 0.85 +0.3
3,890,709 - PFR28_03382 0.85 +0.3
3,890,730 + +0.9
3,891,017 + -1.4
3,891,017 + +0.6
3,891,017 + -0.5
3,891,017 + -0.2
3,891,017 + +0.5
3,891,017 + -0.8
3,891,018 - -0.1
3,891,018 - +1.8
3,891,018 - +0.9
3,891,018 - +0.5
3,891,018 - +0.3
3,891,018 - -0.5
3,891,032 + +1.0
3,891,033 - +0.1
3,891,035 + +0.5
3,891,035 + -4.0
3,891,035 + +1.4
3,891,035 + -1.6
3,891,035 + +1.4
3,891,035 + -0.2
3,891,035 + -0.4
3,891,035 + -1.4
3,891,035 + -0.4
3,891,036 - -1.4
3,891,036 - +0.6
3,891,036 - -0.3
3,891,036 - -0.3
3,891,036 - -0.5
3,891,036 - -0.2
3,891,036 - -1.0
3,891,036 - +0.5
3,891,092 + PFR28_03383 0.11 -2.1
3,891,092 + PFR28_03383 0.11 -1.9
3,891,093 - PFR28_03383 0.11 -0.7
3,891,101 + PFR28_03383 0.11 -0.5
3,891,101 + PFR28_03383 0.11 +0.3
3,891,102 - PFR28_03383 0.11 +2.0
3,891,102 - PFR28_03383 0.11 +0.2
3,891,102 - PFR28_03383 0.11 +0.6
3,891,332 - PFR28_03383 0.19 -1.4
3,891,367 - PFR28_03383 0.21 +1.6
3,891,623 + PFR28_03383 0.30 +0.8
3,891,623 + PFR28_03383 0.30 -1.4
3,891,624 - PFR28_03383 0.30 -0.7
3,891,739 + PFR28_03383 0.34 -0.8
3,891,739 + PFR28_03383 0.34 +0.4
3,891,740 - PFR28_03383 0.34 +0.5

Or see this region's nucleotide sequence