Strain Fitness in Pseudomonas sp. RS175 around PFR28_01004

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
1,088,414	+		PFR28_01002	0.38	+0.6
1,088,414	+		PFR28_01002	0.38	-0.8
1,088,415	-		PFR28_01002	0.38	-0.7
1,088,415	-		PFR28_01002	0.38	-0.3
1,088,415	-		PFR28_01002	0.38	+0.9
1,088,415	-		PFR28_01002	0.38	+1.0
1,088,415	-		PFR28_01002	0.38	+1.0
1,088,486	-		PFR28_01002	0.46	+0.6
1,088,497	+		PFR28_01002	0.47	+1.6
1,088,546	+		PFR28_01002	0.53	+0.8
1,088,547	-		PFR28_01002	0.53	+0.9
1,088,585	+		PFR28_01002	0.57	-0.4
1,088,586	-		PFR28_01002	0.57	+1.6
1,088,719	-		PFR28_01002	0.72	-0.2
1,088,757	-		PFR28_01002	0.76	-0.4
1,088,794	+		PFR28_01002	0.80	-1.3
1,088,794	+		PFR28_01002	0.80	+1.1
1,088,794	+		PFR28_01002	0.80	+0.6
1,088,794	+		PFR28_01002	0.80	+0.3
1,088,794	+		PFR28_01002	0.80	+0.4
1,088,794	+		PFR28_01002	0.80	+0.4
1,088,794	+		PFR28_01002	0.80	+0.7
1,088,794	+		PFR28_01002	0.80	+0.4
1,088,795	-		PFR28_01002	0.80	-0.2
1,088,795	-		PFR28_01002	0.80	-1.8
1,088,795	-		PFR28_01002	0.80	-0.8
1,088,795	-		PFR28_01002	0.80	+0.2
1,088,795	-		PFR28_01002	0.80	+1.2
1,088,795	-		PFR28_01002	0.80	-0.1
1,088,795	-		PFR28_01002	0.80	-1.2
1,088,795	-		PFR28_01002	0.80	-0.0
1,088,795	-		PFR28_01002	0.80	-1.9
1,088,795	-		PFR28_01002	0.80	-3.0
1,088,795	-		PFR28_01002	0.80	+1.3
1,088,795	-		PFR28_01002	0.80	-1.9
1,088,795	-		PFR28_01002	0.80	-0.5
1,088,795	-		PFR28_01002	0.80	+0.4
1,088,795	-		PFR28_01002	0.80	-0.7
1,088,815	+		PFR28_01002	0.83	+0.8
1,088,815	+		PFR28_01002	0.83	-0.6
1,088,816	-		PFR28_01002	0.83	-1.4
1,088,816	-		PFR28_01002	0.83	+1.0
1,088,816	-		PFR28_01002	0.83	-0.2
1,088,816	-		PFR28_01002	0.83	+0.6
1,088,816	-		PFR28_01002	0.83	+0.4
1,088,834	+		PFR28_01002	0.85	+0.4
1,088,835	-		PFR28_01002	0.85	+0.9
1,088,935	+				+0.7
1,088,935	+				+0.6
1,088,935	+				-2.4
1,088,935	+				+0.1
1,088,936	-				-3.1
1,088,966	+				+0.0
1,089,024	+				-0.8
1,089,046	+				-0.5
1,089,047	-				-1.8
1,089,119	-		PFR28_01003	0.33	-2.6
1,089,119	-		PFR28_01003	0.33	-2.6
1,089,119	-		PFR28_01003	0.33	-0.2
1,089,119	-		PFR28_01003	0.33	-2.1
1,089,139	+		PFR28_01003	0.42	-0.5
1,089,140	-		PFR28_01003	0.43	-3.3
1,089,297	+				-0.7
1,089,313	+				-1.2
1,089,313	+				-3.5
1,089,313	+				-2.1
1,089,313	+				-0.2
1,089,313	+				-0.1
1,089,313	+				+0.4
1,089,314	-				+0.5
1,089,314	-				-0.9
1,089,314	-				-0.0
1,089,314	-				+0.5
1,089,314	-				-2.0
1,089,314	-				-1.4
1,089,314	-				-0.4
1,089,314	-				-1.4
1,089,314	-				+0.8
1,089,315	+				-0.5
1,089,315	+				-1.0
1,089,315	+				-2.1
1,089,315	+				+0.2
1,089,315	+				-2.5
1,089,315	+				-0.3
1,089,315	+				-1.8
1,089,315	+				-1.5
1,089,315	+				-1.5
1,089,316	-				-0.3
1,089,316	-				+2.2
1,089,316	-				-0.0
1,089,316	-				-0.6
1,089,316	-				-2.3
1,089,316	-				-0.0
1,089,316	-				-1.7
1,089,316	-				-0.8
1,089,316	-				-0.3
1,089,348	+				-1.3
1,089,348	+				-0.5
1,089,348	+				-0.3
1,089,348	+				-0.0
1,089,349	-				+0.2
1,089,349	-				+1.6
1,089,467	+		PFR28_01004	0.16	-0.3
1,089,467	+		PFR28_01004	0.16	-3.4
1,089,467	+		PFR28_01004	0.16	-0.4
1,089,467	+		PFR28_01004	0.16	-1.7
1,089,467	+		PFR28_01004	0.16	-0.0
1,089,468	-		PFR28_01004	0.16	+0.2
1,089,468	-		PFR28_01004	0.16	-0.3
1,089,468	-		PFR28_01004	0.16	-1.7
1,089,468	-		PFR28_01004	0.16	-0.3
1,089,468	-		PFR28_01004	0.16	-1.0
1,089,468	-		PFR28_01004	0.16	-2.9
1,089,630	+		PFR28_01004	0.43	-2.6
1,089,630	+		PFR28_01004	0.43	+0.9
1,089,631	-		PFR28_01004	0.43	-3.8
1,089,769	+		PFR28_01004	0.66	-2.9
1,089,769	+		PFR28_01004	0.66	-0.0
1,089,769	+		PFR28_01004	0.66	-0.1
1,089,770	-		PFR28_01004	0.67	-1.0
1,089,770	-		PFR28_01004	0.67	-0.6
1,089,770	-		PFR28_01004	0.67	-1.6
1,089,770	-		PFR28_01004	0.67	-2.6
1,089,778	+		PFR28_01004	0.68	-1.2
1,089,779	-		PFR28_01004	0.68	-1.4
1,089,779	-		PFR28_01004	0.68	-0.7
1,089,956	+				-0.2
1,089,957	-				-0.2
1,090,008	+				-1.1
1,090,008	+				+0.8
1,090,008	+				+0.7
1,090,008	+				+0.7
1,090,008	+				+0.3
1,090,009	-				-0.9
1,090,009	-				-0.0
1,090,009	-				+0.9
1,090,009	-				-1.2
1,090,009	-				-1.4
1,090,010	+				+1.5
1,090,010	+				-0.4
1,090,010	+				-0.5
1,090,010	+				+1.3
1,090,010	+				+0.6
1,090,010	+				+0.1
1,090,011	-				+0.3
1,090,011	-				-1.7
1,090,011	-				-0.7
1,090,011	-				-0.7
1,090,011	-				-0.7
1,090,011	-				-0.2
1,090,011	-				-1.6
1,090,011	-				-2.8
1,090,011	-				-0.2
1,090,011	-				-0.2
1,090,011	-				+1.9
1,090,011	-				+0.6
1,090,046	+				-1.2
1,090,046	+				-0.5
1,090,066	+				+1.6
1,090,066	+				-1.3
1,090,066	+				-3.0
1,090,066	+				-0.0
1,090,067	-				-1.3
1,090,067	-				-1.4
1,090,109	+		PFR28_01005	0.11	+0.4
1,090,116	-		PFR28_01005	0.13	-1.1
1,090,130	+		PFR28_01005	0.15	-1.9
1,090,130	+		PFR28_01005	0.15	+1.3
1,090,175	+		PFR28_01005	0.24	-0.5
1,090,199	+		PFR28_01005	0.28	+0.4
1,090,199	+		PFR28_01005	0.28	-2.3
1,090,212	+		PFR28_01005	0.31	-1.2
1,090,212	+		PFR28_01005	0.31	-3.4
1,090,212	+		PFR28_01005	0.31	-0.5
1,090,212	+		PFR28_01005	0.31	-1.9
1,090,213	-		PFR28_01005	0.31	-1.0
1,090,213	-		PFR28_01005	0.31	-4.4
1,090,213	-		PFR28_01005	0.31	-0.9
1,090,213	-		PFR28_01005	0.31	-0.8
1,090,213	-		PFR28_01005	0.31	-0.9
1,090,213	-		PFR28_01005	0.31	+0.4
1,090,213	-		PFR28_01005	0.31	-2.4
1,090,497	-		PFR28_01005	0.83	+1.1
1,090,774	+		PFR28_01006	0.17	-1.7
1,090,774	+		PFR28_01006	0.17	-2.1
1,090,774	+		PFR28_01006	0.17	-4.0
1,090,775	-		PFR28_01006	0.17	-2.8
1,090,775	-		PFR28_01006	0.17	+1.1