Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16945

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
3,705,567	+				-1.2
3,705,567	+				-0.0
3,705,567	+				-2.9
3,705,567	+				-1.1
3,705,567	+				-1.5
3,705,567	+				-1.9
3,705,567	+				-2.1
3,705,567	+				-0.9
3,705,567	+				-1.6
3,705,568	-				-1.0
3,705,568	-				-1.1
3,705,568	-				-2.9
3,705,568	-				-0.5
3,705,568	-				-0.0
3,705,568	-				-1.6
3,705,568	-				-1.0
3,705,683	+				+0.1
3,705,683	+				+0.1
3,705,683	+				+0.9
3,705,683	+				+0.6
3,705,683	+				-0.1
3,705,684	-				-1.8
3,705,684	-				-0.8
3,705,684	-				-1.3
3,705,687	+				-0.4
3,705,687	+				-0.5
3,705,687	+				+1.0
3,705,687	+				+0.2
3,705,687	+				+0.8
3,705,687	+				-0.2
3,705,687	+				-0.0
3,705,687	+				-0.5
3,705,687	+				-0.6
3,705,687	+				-0.7
3,705,687	+				-1.5
3,705,687	+				-1.1
3,705,687	+				-1.3
3,705,687	+				+0.2
3,705,687	+				-2.6
3,705,688	-				-2.3
3,705,688	-				-2.0
3,705,688	-				-1.0
3,705,688	-				-0.4
3,705,688	-				+0.7
3,705,688	-				-0.3
3,705,688	-				-1.9
3,705,688	-				-2.2
3,705,688	-				-0.9
3,705,688	-				-0.2
3,705,688	-				-1.1
3,705,688	-				-0.2
3,705,688	-				-0.1
3,705,688	-				-0.1
3,705,688	-				-0.5
3,705,688	-				-1.8
3,705,688	-				-0.3
3,705,688	-				-1.3
3,705,688	-				+0.1
3,705,747	+				+0.5
3,705,747	+				+0.9
3,705,747	+				-0.1
3,705,747	+				-0.6
3,705,747	+				+0.2
3,705,747	+				+0.3
3,705,747	+				-0.3
3,705,747	+				-0.8
3,705,747	+				+0.4
3,705,747	+				-0.3
3,705,747	+				+0.2
3,705,747	+				+1.2
3,705,747	+				+0.4
3,705,747	+				-1.2
3,705,747	+				-0.9
3,705,747	+				+3.0
3,705,747	+				-1.2
3,705,747	+				+0.1
3,705,747	+				+0.7
3,705,747	+				+1.6
3,705,747	+				-0.1
3,705,747	+				-1.3
3,705,747	+				-0.9
3,705,747	+				-0.3
3,705,747	+				-0.3
3,705,747	+				-0.8
3,705,747	+				-2.0
3,705,747	+				-0.5
3,705,747	+				-0.4
3,705,747	+				+0.6
3,705,747	+				+0.9
3,705,747	+				-0.8
3,705,747	+				+0.1
3,705,747	+				-1.8
3,705,747	+				+1.0
3,705,747	+				+0.1
3,705,747	+				-2.3
3,705,747	+				-1.1
3,705,747	+				-1.2
3,705,747	+				-0.8
3,705,748	-				-1.0
3,705,748	-				-0.3
3,705,748	-				-0.8
3,705,748	-				-2.4
3,705,748	-				-2.0
3,705,748	-				-0.4
3,705,748	-				-0.9
3,705,748	-				-2.2
3,705,748	-				-0.7
3,705,748	-				-2.4
3,705,748	-				-0.8
3,705,748	-				-3.1
3,705,748	-				-0.8
3,705,748	-				-2.8
3,705,748	-				+1.1
3,705,748	-				+0.5
3,705,748	-				-1.7
3,705,748	-				+0.2
3,705,748	-				-2.1
3,705,748	-				-1.6
3,705,748	-				-0.3
3,705,748	-				-1.4
3,705,748	-				-1.2
3,705,748	-				-0.4
3,705,748	-				-1.1
3,705,748	-				-0.0
3,705,748	-				-1.7
3,705,748	-				-0.6
3,705,748	-				-2.5
3,705,748	-				-0.4
3,705,748	-				-2.1
3,705,863	+				-1.4
3,705,957	+		LRK54_RS16940	0.17	+1.0
3,705,957	+		LRK54_RS16940	0.17	-1.7
3,705,957	+		LRK54_RS16940	0.17	-0.2
3,705,957	+		LRK54_RS16940	0.17	-0.6
3,705,957	+		LRK54_RS16940	0.17	-0.9
3,705,957	+		LRK54_RS16940	0.17	+1.6
3,705,957	+		LRK54_RS16940	0.17	-1.1
3,705,958	-		LRK54_RS16940	0.17	-2.0
3,705,958	-		LRK54_RS16940	0.17	-0.2
3,705,990	+		LRK54_RS16940	0.22	-0.0
3,705,990	+		LRK54_RS16940	0.22	-0.2
3,706,086	+		LRK54_RS16940	0.38	+0.6
3,706,086	+		LRK54_RS16940	0.38	-1.0
3,706,086	+		LRK54_RS16940	0.38	-0.8
3,706,086	+		LRK54_RS16940	0.38	-1.6
3,706,086	+		LRK54_RS16940	0.38	+1.6
3,706,086	+		LRK54_RS16940	0.38	-2.8
3,706,086	+		LRK54_RS16940	0.38	-1.0
3,706,086	+		LRK54_RS16940	0.38	-1.0
3,706,086	+		LRK54_RS16940	0.38	-0.2
3,706,086	+		LRK54_RS16940	0.38	-1.7
3,706,086	+		LRK54_RS16940	0.38	-0.0
3,706,086	+		LRK54_RS16940	0.38	-1.4
3,706,086	+		LRK54_RS16940	0.38	-1.2
3,706,087	-		LRK54_RS16940	0.38	-0.8
3,706,087	-		LRK54_RS16940	0.38	-1.5
3,706,087	-		LRK54_RS16940	0.38	-0.9
3,706,098	+		LRK54_RS16940	0.40	-1.8
3,706,098	+		LRK54_RS16940	0.40	-1.6
3,706,098	+		LRK54_RS16940	0.40	-1.7
3,706,098	+		LRK54_RS16940	0.40	-1.1
3,706,098	+		LRK54_RS16940	0.40	+0.2
3,706,098	+		LRK54_RS16940	0.40	-0.0
3,706,098	+		LRK54_RS16940	0.40	-1.9
3,706,098	+		LRK54_RS16940	0.40	-0.0
3,706,098	+		LRK54_RS16940	0.40	-1.3
3,706,098	+		LRK54_RS16940	0.40	-0.4
3,706,099	-		LRK54_RS16940	0.40	+0.2
3,706,099	-		LRK54_RS16940	0.40	-1.9
3,706,099	-		LRK54_RS16940	0.40	+0.6
3,706,099	-		LRK54_RS16940	0.40	-0.0
3,706,341	+		LRK54_RS16940	0.80	-0.0
3,706,341	+		LRK54_RS16940	0.80	-0.2
3,706,341	+		LRK54_RS16940	0.80	+0.2
3,706,341	+		LRK54_RS16940	0.80	-0.0
3,706,341	+		LRK54_RS16940	0.80	-1.0
3,706,341	+		LRK54_RS16940	0.80	-0.9
3,706,341	+		LRK54_RS16940	0.80	-0.9
3,706,341	+		LRK54_RS16940	0.80	-0.4
3,706,341	+		LRK54_RS16940	0.80	-0.6
3,706,341	+		LRK54_RS16940	0.80	-0.0
3,706,341	+		LRK54_RS16940	0.80	-0.0
3,706,342	-		LRK54_RS16940	0.80	-0.0
3,706,380	-		LRK54_RS16940	0.86	+0.2
3,707,057	+		LRK54_RS16945	0.89	-1.8
3,707,057	+		LRK54_RS16945	0.89	-1.6
3,707,057	+		LRK54_RS16945	0.89	+0.4
3,707,057	+		LRK54_RS16945	0.89	-1.9
3,707,057	+		LRK54_RS16945	0.89	-2.0
3,707,057	+		LRK54_RS16945	0.89	+1.3
3,707,057	+		LRK54_RS16945	0.89	-1.0
3,707,057	+		LRK54_RS16945	0.89	-1.5
3,707,057	+		LRK54_RS16945	0.89	+0.3
3,707,057	+		LRK54_RS16945	0.89	-1.5
3,707,057	+		LRK54_RS16945	0.89	-0.4
3,707,057	+		LRK54_RS16945	0.89	-1.2
3,707,058	-		LRK54_RS16945	0.89	-1.2
3,707,453	+		LRK54_RS16950	0.11	+0.2
3,707,453	+		LRK54_RS16950	0.11	-1.7
3,707,453	+		LRK54_RS16950	0.11	-0.9
3,707,453	+		LRK54_RS16950	0.11	-2.3
3,707,453	+		LRK54_RS16950	0.11	-0.4
3,707,454	-		LRK54_RS16950	0.11	-1.0
3,707,454	-		LRK54_RS16950	0.11	-0.0
3,707,454	-		LRK54_RS16950	0.11	-1.2
3,707,636	+		LRK54_RS16950	0.23	-1.3
3,707,636	+		LRK54_RS16950	0.23	+0.6
3,707,636	+		LRK54_RS16950	0.23	-1.0
3,707,636	+		LRK54_RS16950	0.23	-1.7
3,707,636	+		LRK54_RS16950	0.23	-0.0
3,707,636	+		LRK54_RS16950	0.23	+0.4
3,707,636	+		LRK54_RS16950	0.23	-0.6
3,707,636	+		LRK54_RS16950	0.23	-0.2
3,707,636	+		LRK54_RS16950	0.23	-1.0
3,707,636	+		LRK54_RS16950	0.23	-1.2
3,707,636	+		LRK54_RS16950	0.23	-1.9
3,707,636	+		LRK54_RS16950	0.23	-2.1
3,707,636	+		LRK54_RS16950	0.23	+0.1
3,707,636	+		LRK54_RS16950	0.23	-0.9
3,707,636	+		LRK54_RS16950	0.23	-2.0
3,707,637	-		LRK54_RS16950	0.23	-2.4
3,707,637	-		LRK54_RS16950	0.23	-0.0
3,707,637	-		LRK54_RS16950	0.23	-0.6
3,707,637	-		LRK54_RS16950	0.23	-0.2
3,707,637	-		LRK54_RS16950	0.23	+1.6
3,707,637	-		LRK54_RS16950	0.23	-0.0
3,707,637	-		LRK54_RS16950	0.23	+0.8
3,707,637	-		LRK54_RS16950	0.23	-1.5
3,707,637	-		LRK54_RS16950	0.23	+1.6
3,707,637	-		LRK54_RS16950	0.23	-0.5
3,707,637	-		LRK54_RS16950	0.23	-0.1
3,707,637	-		LRK54_RS16950	0.23	-1.0
3,707,637	-		LRK54_RS16950	0.23	-0.3
3,707,637	-		LRK54_RS16950	0.23	-1.6
3,707,637	-		LRK54_RS16950	0.23	+0.2
3,707,637	-		LRK54_RS16950	0.23	-2.1
3,707,637	-		LRK54_RS16950	0.23	-1.1
3,707,637	-		LRK54_RS16950	0.23	-1.5
3,707,637	-		LRK54_RS16950	0.23	-0.1
3,707,704	+		LRK54_RS16950	0.28	-0.7
3,707,704	+		LRK54_RS16950	0.28	-1.8
3,707,704	+		LRK54_RS16950	0.28	-0.2
3,707,704	+		LRK54_RS16950	0.28	-1.6
3,707,704	+		LRK54_RS16950	0.28	-0.6
3,707,704	+		LRK54_RS16950	0.28	+0.2
3,707,704	+		LRK54_RS16950	0.28	-2.1
3,707,704	+		LRK54_RS16950	0.28	-2.4
3,707,704	+		LRK54_RS16950	0.28	-1.8
3,707,704	+		LRK54_RS16950	0.28	-0.4
3,707,705	-		LRK54_RS16950	0.28	-0.2
3,707,705	-		LRK54_RS16950	0.28	+0.2
3,707,705	-		LRK54_RS16950	0.28	+0.4
3,707,705	-		LRK54_RS16950	0.28	+0.6
3,707,705	-		LRK54_RS16950	0.28	-0.9
3,707,705	-		LRK54_RS16950	0.28	-0.1
3,707,741	+		LRK54_RS16950	0.30	-2.1
3,707,741	+		LRK54_RS16950	0.30	-1.5
3,707,741	+		LRK54_RS16950	0.30	-0.5
3,707,741	+		LRK54_RS16950	0.30	+0.2
3,707,741	+		LRK54_RS16950	0.30	-2.2
3,707,741	+		LRK54_RS16950	0.30	-1.1
3,707,741	+		LRK54_RS16950	0.30	-0.6
3,707,741	+		LRK54_RS16950	0.30	-1.1
3,707,741	+		LRK54_RS16950	0.30	-2.1
3,707,741	+		LRK54_RS16950	0.30	-1.7
3,707,742	-		LRK54_RS16950	0.30	-0.9
3,707,742	-		LRK54_RS16950	0.30	-2.6
3,707,742	-		LRK54_RS16950	0.30	+0.6
3,707,742	-		LRK54_RS16950	0.30	+0.0
3,707,742	-		LRK54_RS16950	0.30	-2.4
3,707,742	-		LRK54_RS16950	0.30	+2.6
3,707,742	-		LRK54_RS16950	0.30	-0.2
3,707,742	-		LRK54_RS16950	0.30	-3.0
3,707,742	-		LRK54_RS16950	0.30	-0.8
3,707,742	-		LRK54_RS16950	0.30	-0.1
3,707,742	-		LRK54_RS16950	0.30	-1.8
3,707,742	-		LRK54_RS16950	0.30	-0.8
3,707,742	-		LRK54_RS16950	0.30	-2.8
3,707,742	-		LRK54_RS16950	0.30	-1.0
3,707,742	-		LRK54_RS16950	0.30	-2.6
3,707,742	-		LRK54_RS16950	0.30	-0.9
3,707,864	+		LRK54_RS16950	0.39	-2.8
3,707,864	+		LRK54_RS16950	0.39	+0.6
3,707,864	+		LRK54_RS16950	0.39	-0.7
3,707,864	+		LRK54_RS16950	0.39	+0.2
3,707,864	+		LRK54_RS16950	0.39	-2.1
3,707,864	+		LRK54_RS16950	0.39	-0.4
3,707,865	-		LRK54_RS16950	0.39	-3.1
3,707,865	-		LRK54_RS16950	0.39	+1.6
3,707,865	-		LRK54_RS16950	0.39	-2.6
3,707,865	-		LRK54_RS16950	0.39	-0.0
3,707,865	-		LRK54_RS16950	0.39	-1.3
3,707,865	-		LRK54_RS16950	0.39	-1.6
3,707,865	-		LRK54_RS16950	0.39	+0.3
3,707,865	-		LRK54_RS16950	0.39	+0.2
3,707,927	+		LRK54_RS16950	0.43	-2.4
3,707,927	+		LRK54_RS16950	0.43	-1.1
3,707,927	+		LRK54_RS16950	0.43	-2.4
3,707,927	+		LRK54_RS16950	0.43	-1.8
3,707,927	+		LRK54_RS16950	0.43	-1.5
3,707,927	+		LRK54_RS16950	0.43	+0.2
3,707,927	+		LRK54_RS16950	0.43	-0.8
3,707,927	+		LRK54_RS16950	0.43	+1.1
3,707,927	+		LRK54_RS16950	0.43	-2.8
3,707,927	+		LRK54_RS16950	0.43	-0.5
3,707,927	+		LRK54_RS16950	0.43	+0.2
3,707,927	+		LRK54_RS16950	0.43	-0.8
3,707,927	+		LRK54_RS16950	0.43	-0.4
3,707,927	+		LRK54_RS16950	0.43	-0.4
3,707,927	+		LRK54_RS16950	0.43	-0.8
3,707,927	+		LRK54_RS16950	0.43	+1.0
3,707,928	-		LRK54_RS16950	0.43	-2.0
3,707,928	-		LRK54_RS16950	0.43	-2.3
3,707,928	-		LRK54_RS16950	0.43	-1.6
3,707,928	-		LRK54_RS16950	0.43	-1.5
3,707,928	-		LRK54_RS16950	0.43	+0.6
3,707,928	-		LRK54_RS16950	0.43	-1.9
3,707,928	-		LRK54_RS16950	0.43	-1.6
3,707,928	-		LRK54_RS16950	0.43	+0.2
3,707,928	-		LRK54_RS16950	0.43	-0.2
3,707,928	-		LRK54_RS16950	0.43	-0.2
3,707,928	-		LRK54_RS16950	0.43	-1.9
3,707,928	-		LRK54_RS16950	0.43	-2.5
3,707,928	-		LRK54_RS16950	0.43	+1.0
3,708,029	+		LRK54_RS16950	0.50	+0.2
3,708,029	+		LRK54_RS16950	0.50	-0.4
3,708,029	+		LRK54_RS16950	0.50	+3.6
3,708,029	+		LRK54_RS16950	0.50	-1.6
3,708,029	+		LRK54_RS16950	0.50	-1.9
3,708,029	+		LRK54_RS16950	0.50	-0.6
3,708,029	+		LRK54_RS16950	0.50	-0.6
3,708,029	+		LRK54_RS16950	0.50	+0.2
3,708,029	+		LRK54_RS16950	0.50	+0.2
3,708,029	+		LRK54_RS16950	0.50	-1.7
3,708,029	+		LRK54_RS16950	0.50	-0.0
3,708,029	+		LRK54_RS16950	0.50	-0.8
3,708,029	+		LRK54_RS16950	0.50	-2.0
3,708,029	+		LRK54_RS16950	0.50	+0.2
3,708,029	+		LRK54_RS16950	0.50	-0.9
3,708,029	+		LRK54_RS16950	0.50	-1.8
3,708,029	+		LRK54_RS16950	0.50	+1.6
3,708,029	+		LRK54_RS16950	0.50	-2.4
3,708,029	+		LRK54_RS16950	0.50	-1.2
3,708,029	+		LRK54_RS16950	0.50	-1.3
3,708,029	+		LRK54_RS16950	0.50	-1.4
3,708,029	+		LRK54_RS16950	0.50	-0.6
3,708,029	+		LRK54_RS16950	0.50	+1.6
3,708,029	+		LRK54_RS16950	0.50	-1.8
3,708,029	+		LRK54_RS16950	0.50	-0.4
3,708,030	-		LRK54_RS16950	0.50	-0.4
3,708,030	-		LRK54_RS16950	0.50	-1.3
3,708,030	-		LRK54_RS16950	0.50	-1.5
3,708,030	-		LRK54_RS16950	0.50	-1.1
3,708,030	-		LRK54_RS16950	0.50	-1.4
3,708,030	-		LRK54_RS16950	0.50	-0.2
3,708,030	-		LRK54_RS16950	0.50	-1.5
3,708,030	-		LRK54_RS16950	0.50	-0.4
3,708,030	-		LRK54_RS16950	0.50	-2.0
3,708,030	-		LRK54_RS16950	0.50	+2.6
3,708,030	-		LRK54_RS16950	0.50	-2.1
3,708,030	-		LRK54_RS16950	0.50	+0.1
3,708,030	-		LRK54_RS16950	0.50	-2.9
3,708,047	+		LRK54_RS16950	0.51	-0.0
3,708,047	+		LRK54_RS16950	0.51	-1.0
3,708,047	+		LRK54_RS16950	0.51	+0.8
3,708,047	+		LRK54_RS16950	0.51	+3.6
3,708,047	+		LRK54_RS16950	0.51	-0.2
3,708,047	+		LRK54_RS16950	0.51	-2.2
3,708,047	+		LRK54_RS16950	0.51	+1.0
3,708,047	+		LRK54_RS16950	0.51	+2.6
3,708,047	+		LRK54_RS16950	0.51	-2.2
3,708,047	+		LRK54_RS16950	0.51	-0.2
3,708,047	+		LRK54_RS16950	0.51	+1.6
3,708,047	+		LRK54_RS16950	0.51	-1.5
3,708,048	-		LRK54_RS16950	0.51	-0.8
3,708,048	-		LRK54_RS16950	0.51	-1.8
3,708,048	-		LRK54_RS16950	0.51	-1.4
3,708,048	-		LRK54_RS16950	0.51	-1.4
3,708,048	-		LRK54_RS16950	0.51	+1.2
3,708,048	-		LRK54_RS16950	0.51	-0.8
3,708,048	-		LRK54_RS16950	0.51	-1.0
3,708,119	+		LRK54_RS16950	0.56	-1.4
3,708,119	+		LRK54_RS16950	0.56	-0.5
3,708,119	+		LRK54_RS16950	0.56	+0.8
3,708,119	+		LRK54_RS16950	0.56	-0.3
3,708,119	+		LRK54_RS16950	0.56	+0.6
3,708,119	+		LRK54_RS16950	0.56	-0.6
3,708,119	+		LRK54_RS16950	0.56	-0.2
3,708,119	+		LRK54_RS16950	0.56	+0.6
3,708,119	+		LRK54_RS16950	0.56	-0.1
3,708,119	+		LRK54_RS16950	0.56	-0.8
3,708,119	+		LRK54_RS16950	0.56	-2.1
3,708,119	+		LRK54_RS16950	0.56	-1.3
3,708,119	+		LRK54_RS16950	0.56	+0.5
3,708,119	+		LRK54_RS16950	0.56	-1.8
3,708,120	-		LRK54_RS16950	0.56	-0.1
3,708,120	-		LRK54_RS16950	0.56	-0.2
3,708,120	-		LRK54_RS16950	0.56	-0.8
3,708,120	-		LRK54_RS16950	0.56	-0.6
3,708,120	-		LRK54_RS16950	0.56	-2.3
3,708,120	-		LRK54_RS16950	0.56	+0.2
3,708,120	-		LRK54_RS16950	0.56	-1.7
3,708,120	-		LRK54_RS16950	0.56	-1.6
3,708,120	-		LRK54_RS16950	0.56	+0.4
3,708,120	-		LRK54_RS16950	0.56	-0.9
3,708,120	-		LRK54_RS16950	0.56	-1.5