Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03010 and ABID97_RS03015 are separated by 87 nucleotides ABID97_RS03015 and ABID97_RS03020 are separated by 83 nucleotides
ABID97_RS03010: ABID97_RS03010 - solute carrier family 23 protein, at 609,659 to 610,960
_RS03010
ABID97_RS03015: ABID97_RS03015 - hotdog fold thioesterase, at 611,048 to 611,470
_RS03015
ABID97_RS03020: ABID97_RS03020 - hypothetical protein, at 611,554 to 612,885
_RS03020
Position (kb) 611
612 Strain fitness (log2 ratio) -1
0
1 at 610.050 kb on + strand, within ABID97_RS03010 at 610.050 kb on + strand, within ABID97_RS03010 at 610.050 kb on + strand, within ABID97_RS03010 at 610.051 kb on - strand, within ABID97_RS03010 at 610.051 kb on - strand, within ABID97_RS03010 at 610.051 kb on - strand, within ABID97_RS03010 at 610.128 kb on + strand, within ABID97_RS03010 at 610.128 kb on + strand, within ABID97_RS03010 at 610.128 kb on + strand, within ABID97_RS03010 at 610.128 kb on + strand, within ABID97_RS03010 at 610.129 kb on - strand, within ABID97_RS03010 at 610.129 kb on - strand, within ABID97_RS03010 at 610.341 kb on + strand, within ABID97_RS03010 at 610.342 kb on - strand, within ABID97_RS03010 at 610.342 kb on - strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.602 kb on + strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.603 kb on - strand, within ABID97_RS03010 at 610.671 kb on + strand, within ABID97_RS03010 at 610.722 kb on + strand, within ABID97_RS03010 at 610.722 kb on + strand, within ABID97_RS03010 at 610.722 kb on + strand, within ABID97_RS03010 at 610.723 kb on - strand, within ABID97_RS03010 at 610.723 kb on - strand, within ABID97_RS03010 at 610.949 kb on + strand at 610.949 kb on + strand at 610.950 kb on - strand at 610.950 kb on - strand at 610.950 kb on - strand at 610.970 kb on - strand at 611.226 kb on - strand, within ABID97_RS03015 at 611.501 kb on + strand at 611.501 kb on + strand at 611.502 kb on - strand at 611.502 kb on - strand at 611.542 kb on + strand at 612.053 kb on - strand, within ABID97_RS03020
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 610,050 + ABID97_RS03010 0.30 +1.6 610,050 + ABID97_RS03010 0.30 +0.5 610,050 + ABID97_RS03010 0.30 +1.0 610,051 - ABID97_RS03010 0.30 -0.1 610,051 - ABID97_RS03010 0.30 -0.6 610,051 - ABID97_RS03010 0.30 -0.1 610,128 + ABID97_RS03010 0.36 -0.3 610,128 + ABID97_RS03010 0.36 +1.2 610,128 + ABID97_RS03010 0.36 +0.2 610,128 + ABID97_RS03010 0.36 -0.6 610,129 - ABID97_RS03010 0.36 +0.1 610,129 - ABID97_RS03010 0.36 -0.2 610,341 + ABID97_RS03010 0.52 +0.1 610,342 - ABID97_RS03010 0.52 +0.0 610,342 - ABID97_RS03010 0.52 -0.1 610,602 + ABID97_RS03010 0.72 +0.3 610,602 + ABID97_RS03010 0.72 -0.4 610,602 + ABID97_RS03010 0.72 -0.4 610,602 + ABID97_RS03010 0.72 -0.0 610,602 + ABID97_RS03010 0.72 -0.7 610,602 + ABID97_RS03010 0.72 +0.5 610,602 + ABID97_RS03010 0.72 -0.7 610,602 + ABID97_RS03010 0.72 -0.2 610,603 - ABID97_RS03010 0.73 -0.1 610,603 - ABID97_RS03010 0.73 +0.5 610,603 - ABID97_RS03010 0.73 -0.7 610,603 - ABID97_RS03010 0.73 +0.2 610,603 - ABID97_RS03010 0.73 -0.3 610,603 - ABID97_RS03010 0.73 -0.1 610,603 - ABID97_RS03010 0.73 +1.0 610,603 - ABID97_RS03010 0.73 -0.3 610,603 - ABID97_RS03010 0.73 -0.4 610,671 + ABID97_RS03010 0.78 +0.6 610,722 + ABID97_RS03010 0.82 -0.4 610,722 + ABID97_RS03010 0.82 -0.2 610,722 + ABID97_RS03010 0.82 +0.0 610,723 - ABID97_RS03010 0.82 -0.2 610,723 - ABID97_RS03010 0.82 -0.2 610,949 + -0.3 610,949 + +0.6 610,950 - -1.0 610,950 - -0.1 610,950 - -0.4 610,970 - +0.2 611,226 - ABID97_RS03015 0.42 -1.0 611,501 + -0.2 611,501 + -0.3 611,502 - -0.6 611,502 - -1.0 611,542 + -0.2 612,053 - ABID97_RS03020 0.37 -0.5
Or see this region's nucleotide sequence