Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02370

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02365 and ABID97_RS02370 are separated by 187 nucleotidesABID97_RS02370 and ABID97_RS02375 are separated by 300 nucleotides ABID97_RS02365: ABID97_RS02365 - pirin family protein, at 475,705 to 476,571 _RS02365 ABID97_RS02370: ABID97_RS02370 - LysR family transcriptional regulator, at 476,759 to 477,688 _RS02370 ABID97_RS02375: ABID97_RS02375 - anti-phage dCTP deaminase, at 477,989 to 479,488 _RS02375 Position (kb) 476 477 478Strain fitness (log2 ratio) -1 0 1 2 3at 475.800 kb on - strand, within ABID97_RS02365at 476.010 kb on - strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.048 kb on + strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.049 kb on - strand, within ABID97_RS02365at 476.093 kb on + strand, within ABID97_RS02365at 476.094 kb on - strand, within ABID97_RS02365at 476.094 kb on - strand, within ABID97_RS02365at 476.094 kb on - strand, within ABID97_RS02365at 476.094 kb on - strand, within ABID97_RS02365at 476.094 kb on - strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.150 kb on + strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.151 kb on - strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.327 kb on + strand, within ABID97_RS02365at 476.328 kb on - strand, within ABID97_RS02365at 476.328 kb on - strand, within ABID97_RS02365at 476.328 kb on - strand, within ABID97_RS02365at 476.520 kb on - strandat 476.591 kb on - strandat 476.685 kb on + strandat 476.685 kb on + strandat 476.686 kb on - strandat 476.721 kb on - strandat 476.721 kb on - strandat 476.851 kb on + strandat 476.851 kb on + strandat 476.851 kb on + strandat 476.851 kb on + strandat 476.851 kb on + strandat 476.852 kb on - strand, within ABID97_RS02370at 476.852 kb on - strand, within ABID97_RS02370at 476.852 kb on - strand, within ABID97_RS02370at 477.215 kb on + strand, within ABID97_RS02370at 477.216 kb on - strand, within ABID97_RS02370at 477.216 kb on - strand, within ABID97_RS02370at 477.216 kb on - strand, within ABID97_RS02370at 477.216 kb on - strand, within ABID97_RS02370at 477.216 kb on - strand, within ABID97_RS02370at 477.272 kb on + strand, within ABID97_RS02370at 477.272 kb on + strand, within ABID97_RS02370at 477.272 kb on + strand, within ABID97_RS02370at 477.272 kb on + strand, within ABID97_RS02370at 477.272 kb on + strand, within ABID97_RS02370at 477.273 kb on - strand, within ABID97_RS02370at 477.273 kb on - strand, within ABID97_RS02370at 477.273 kb on - strand, within ABID97_RS02370at 477.273 kb on - strand, within ABID97_RS02370at 477.542 kb on + strand, within ABID97_RS02370at 477.543 kb on - strand, within ABID97_RS02370at 477.575 kb on + strand, within ABID97_RS02370at 477.576 kb on - strand, within ABID97_RS02370at 477.657 kb on + strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.658 kb on - strandat 477.666 kb on + strandat 477.666 kb on + strandat 477.666 kb on + strandat 477.667 kb on - strandat 477.686 kb on + strandat 477.686 kb on + strandat 477.686 kb on + strandat 477.687 kb on - strandat 477.687 kb on - strandat 477.687 kb on - strandat 477.719 kb on + strandat 477.720 kb on - strandat 477.720 kb on - strandat 477.720 kb on - strandat 477.720 kb on - strandat 477.739 kb on + strandat 477.739 kb on + strandat 477.768 kb on + strandat 477.768 kb on + strandat 477.885 kb on + strandat 477.885 kb on + strandat 477.885 kb on + strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.886 kb on - strandat 477.908 kb on - strandat 477.990 kb on + strandat 477.990 kb on + strandat 477.990 kb on + strandat 477.991 kb on - strandat 477.991 kb on - strandat 477.996 kb on + strandat 478.067 kb on - strandat 478.076 kb on - strandat 478.125 kb on + strandat 478.236 kb on + strand, within ABID97_RS02375at 478.310 kb on + strand, within ABID97_RS02375at 478.310 kb on + strand, within ABID97_RS02375at 478.310 kb on + strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.311 kb on - strand, within ABID97_RS02375at 478.318 kb on - strand, within ABID97_RS02375at 478.318 kb on - strand, within ABID97_RS02375at 478.318 kb on - strand, within ABID97_RS02375at 478.318 kb on - strand, within ABID97_RS02375at 478.352 kb on + strand, within ABID97_RS02375at 478.492 kb on - strand, within ABID97_RS02375at 478.492 kb on - strand, within ABID97_RS02375at 478.523 kb on - strand, within ABID97_RS02375at 478.565 kb on + strand, within ABID97_RS02375at 478.566 kb on - strand, within ABID97_RS02375at 478.566 kb on - strand, within ABID97_RS02375at 478.596 kb on + strand, within ABID97_RS02375at 478.597 kb on - strand, within ABID97_RS02375at 478.597 kb on - strand, within ABID97_RS02375at 478.626 kb on + strand, within ABID97_RS02375at 478.643 kb on + strand, within ABID97_RS02375at 478.644 kb on - strand, within ABID97_RS02375at 478.644 kb on - strand, within ABID97_RS02375at 478.644 kb on - strand, within ABID97_RS02375at 478.644 kb on - strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.645 kb on + strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.646 kb on - strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.647 kb on + strand, within ABID97_RS02375at 478.648 kb on - strand, within ABID97_RS02375at 478.648 kb on - strand, within ABID97_RS02375at 478.648 kb on - strand, within ABID97_RS02375at 478.648 kb on - strand, within ABID97_RS02375at 478.654 kb on + strand, within ABID97_RS02375at 478.655 kb on - strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.679 kb on + strand, within ABID97_RS02375at 478.680 kb on - strand, within ABID97_RS02375at 478.680 kb on - strand, within ABID97_RS02375at 478.680 kb on - strand, within ABID97_RS02375at 478.680 kb on - strand, within ABID97_RS02375at 478.680 kb on - strand, within ABID97_RS02375

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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475,800 - ABID97_RS02365 0.11 +0.1
476,010 - ABID97_RS02365 0.35 -0.2
476,048 + ABID97_RS02365 0.40 +0.2
476,048 + ABID97_RS02365 0.40 -0.7
476,048 + ABID97_RS02365 0.40 +0.2
476,048 + ABID97_RS02365 0.40 +0.4
476,048 + ABID97_RS02365 0.40 -0.6
476,048 + ABID97_RS02365 0.40 -0.3
476,048 + ABID97_RS02365 0.40 -0.0
476,048 + ABID97_RS02365 0.40 -0.3
476,048 + ABID97_RS02365 0.40 +0.0
476,049 - ABID97_RS02365 0.40 +0.6
476,049 - ABID97_RS02365 0.40 -0.3
476,049 - ABID97_RS02365 0.40 -0.3
476,049 - ABID97_RS02365 0.40 +0.1
476,049 - ABID97_RS02365 0.40 -0.2
476,049 - ABID97_RS02365 0.40 -0.8
476,049 - ABID97_RS02365 0.40 +0.1
476,049 - ABID97_RS02365 0.40 -0.0
476,093 + ABID97_RS02365 0.45 +0.1
476,094 - ABID97_RS02365 0.45 -0.5
476,094 - ABID97_RS02365 0.45 +0.0
476,094 - ABID97_RS02365 0.45 +0.1
476,094 - ABID97_RS02365 0.45 -0.2
476,094 - ABID97_RS02365 0.45 -0.4
476,150 + ABID97_RS02365 0.51 -0.5
476,150 + ABID97_RS02365 0.51 +0.2
476,150 + ABID97_RS02365 0.51 -0.5
476,150 + ABID97_RS02365 0.51 +0.4
476,150 + ABID97_RS02365 0.51 -0.0
476,150 + ABID97_RS02365 0.51 +2.4
476,150 + ABID97_RS02365 0.51 +0.5
476,150 + ABID97_RS02365 0.51 +0.3
476,150 + ABID97_RS02365 0.51 -0.2
476,151 - ABID97_RS02365 0.51 -0.4
476,151 - ABID97_RS02365 0.51 -0.5
476,151 - ABID97_RS02365 0.51 +0.0
476,151 - ABID97_RS02365 0.51 -0.1
476,151 - ABID97_RS02365 0.51 +0.3
476,151 - ABID97_RS02365 0.51 -0.3
476,151 - ABID97_RS02365 0.51 -0.2
476,151 - ABID97_RS02365 0.51 -0.2
476,327 + ABID97_RS02365 0.72 +0.1
476,327 + ABID97_RS02365 0.72 -0.4
476,327 + ABID97_RS02365 0.72 +0.3
476,327 + ABID97_RS02365 0.72 +0.2
476,327 + ABID97_RS02365 0.72 -0.5
476,327 + ABID97_RS02365 0.72 +1.6
476,328 - ABID97_RS02365 0.72 -0.7
476,328 - ABID97_RS02365 0.72 -0.1
476,328 - ABID97_RS02365 0.72 -0.3
476,520 - -0.0
476,591 - -0.1
476,685 + -0.8
476,685 + -0.4
476,686 - +0.4
476,721 - +0.9
476,721 - -0.3
476,851 + -0.1
476,851 + +0.0
476,851 + -0.4
476,851 + -0.0
476,851 + +0.4
476,852 - ABID97_RS02370 0.10 -0.3
476,852 - ABID97_RS02370 0.10 +0.2
476,852 - ABID97_RS02370 0.10 +0.0
477,215 + ABID97_RS02370 0.49 +0.6
477,216 - ABID97_RS02370 0.49 -0.2
477,216 - ABID97_RS02370 0.49 +0.1
477,216 - ABID97_RS02370 0.49 +0.0
477,216 - ABID97_RS02370 0.49 -0.5
477,216 - ABID97_RS02370 0.49 +0.1
477,272 + ABID97_RS02370 0.55 +1.6
477,272 + ABID97_RS02370 0.55 +0.0
477,272 + ABID97_RS02370 0.55 +0.1
477,272 + ABID97_RS02370 0.55 +0.5
477,272 + ABID97_RS02370 0.55 +0.3
477,273 - ABID97_RS02370 0.55 +0.6
477,273 - ABID97_RS02370 0.55 -0.1
477,273 - ABID97_RS02370 0.55 +0.1
477,273 - ABID97_RS02370 0.55 +0.8
477,542 + ABID97_RS02370 0.84 +0.3
477,543 - ABID97_RS02370 0.84 +0.0
477,575 + ABID97_RS02370 0.88 +0.2
477,576 - ABID97_RS02370 0.88 -0.1
477,657 + +0.4
477,658 - +0.1
477,658 - -0.2
477,658 - -0.3
477,658 - +0.2
477,658 - +0.0
477,658 - -0.4
477,658 - -0.1
477,666 + +0.2
477,666 + +0.2
477,666 + +0.2
477,667 - +0.6
477,686 + -0.8
477,686 + +0.2
477,686 + -0.3
477,687 - -0.3
477,687 - +0.1
477,687 - -1.0
477,719 + +0.2
477,720 - +0.2
477,720 - +0.3
477,720 - -0.8
477,720 - -1.0
477,739 + -0.4
477,739 + -0.5
477,768 + -0.5
477,768 + -0.5
477,885 + -0.1
477,885 + -0.3
477,885 + +0.2
477,886 - +0.1
477,886 - -0.2
477,886 - +0.1
477,886 - -0.1
477,908 - -0.3
477,990 + -0.0
477,990 + -0.2
477,990 + +3.0
477,991 - +0.3
477,991 - +0.4
477,996 + +0.2
478,067 - -0.6
478,076 - +0.5
478,125 + +0.1
478,236 + ABID97_RS02375 0.16 -0.3
478,310 + ABID97_RS02375 0.21 +1.0
478,310 + ABID97_RS02375 0.21 +0.1
478,310 + ABID97_RS02375 0.21 +0.2
478,311 - ABID97_RS02375 0.21 +2.6
478,311 - ABID97_RS02375 0.21 -0.2
478,311 - ABID97_RS02375 0.21 +0.4
478,311 - ABID97_RS02375 0.21 -0.1
478,311 - ABID97_RS02375 0.21 +0.3
478,311 - ABID97_RS02375 0.21 -1.0
478,311 - ABID97_RS02375 0.21 +0.0
478,311 - ABID97_RS02375 0.21 +0.1
478,311 - ABID97_RS02375 0.21 -0.0
478,318 - ABID97_RS02375 0.22 +0.5
478,318 - ABID97_RS02375 0.22 +0.0
478,318 - ABID97_RS02375 0.22 -0.1
478,318 - ABID97_RS02375 0.22 -0.8
478,352 + ABID97_RS02375 0.24 -0.5
478,492 - ABID97_RS02375 0.34 -0.2
478,492 - ABID97_RS02375 0.34 +0.1
478,523 - ABID97_RS02375 0.36 +0.6
478,565 + ABID97_RS02375 0.38 -0.5
478,566 - ABID97_RS02375 0.38 +0.0
478,566 - ABID97_RS02375 0.38 +0.9
478,596 + ABID97_RS02375 0.40 +0.2
478,597 - ABID97_RS02375 0.41 -0.1
478,597 - ABID97_RS02375 0.41 +0.4
478,626 + ABID97_RS02375 0.42 -0.5
478,643 + ABID97_RS02375 0.44 -0.1
478,644 - ABID97_RS02375 0.44 -0.4
478,644 - ABID97_RS02375 0.44 +0.1
478,644 - ABID97_RS02375 0.44 -0.0
478,644 - ABID97_RS02375 0.44 +0.3
478,645 + ABID97_RS02375 0.44 +1.3
478,645 + ABID97_RS02375 0.44 -0.2
478,645 + ABID97_RS02375 0.44 -0.3
478,645 + ABID97_RS02375 0.44 +0.2
478,645 + ABID97_RS02375 0.44 +0.4
478,645 + ABID97_RS02375 0.44 +0.1
478,645 + ABID97_RS02375 0.44 -0.3
478,646 - ABID97_RS02375 0.44 -0.3
478,646 - ABID97_RS02375 0.44 +0.1
478,646 - ABID97_RS02375 0.44 +0.0
478,646 - ABID97_RS02375 0.44 +0.3
478,646 - ABID97_RS02375 0.44 -0.3
478,646 - ABID97_RS02375 0.44 -0.1
478,646 - ABID97_RS02375 0.44 -0.9
478,646 - ABID97_RS02375 0.44 -0.0
478,647 + ABID97_RS02375 0.44 -0.4
478,647 + ABID97_RS02375 0.44 +1.4
478,647 + ABID97_RS02375 0.44 +0.1
478,647 + ABID97_RS02375 0.44 +0.2
478,647 + ABID97_RS02375 0.44 -0.2
478,647 + ABID97_RS02375 0.44 -0.7
478,647 + ABID97_RS02375 0.44 -0.4
478,648 - ABID97_RS02375 0.44 -0.0
478,648 - ABID97_RS02375 0.44 -0.3
478,648 - ABID97_RS02375 0.44 +0.4
478,648 - ABID97_RS02375 0.44 -0.5
478,654 + ABID97_RS02375 0.44 +0.4
478,655 - ABID97_RS02375 0.44 -1.3
478,679 + ABID97_RS02375 0.46 -0.0
478,679 + ABID97_RS02375 0.46 +0.5
478,679 + ABID97_RS02375 0.46 -0.1
478,679 + ABID97_RS02375 0.46 +0.1
478,679 + ABID97_RS02375 0.46 +0.3
478,679 + ABID97_RS02375 0.46 -0.0
478,679 + ABID97_RS02375 0.46 -0.4
478,679 + ABID97_RS02375 0.46 +0.4
478,680 - ABID97_RS02375 0.46 +0.1
478,680 - ABID97_RS02375 0.46 -0.5
478,680 - ABID97_RS02375 0.46 +0.5
478,680 - ABID97_RS02375 0.46 -0.2
478,680 - ABID97_RS02375 0.46 -0.1

Or see this region's nucleotide sequence