Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02770

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02760 and ABID97_RS02765 are separated by 7 nucleotidesABID97_RS02765 and ABID97_RS02770 overlap by 20 nucleotidesABID97_RS02770 and ABID97_RS02775 are separated by 20 nucleotides ABID97_RS02760: ABID97_RS02760 - biosynthetic peptidoglycan transglycosylase, at 561,997 to 563,265 _RS02760 ABID97_RS02765: ABID97_RS02765 - hypothetical protein, at 563,273 to 563,842 _RS02765 ABID97_RS02770: ABID97_RS02770 - exosortase Q, at 563,823 to 564,752 _RS02770 ABID97_RS02775: ABID97_RS02775 - VIT and VWA domain-containing protein, at 564,773 to 566,848 _RS02775 Position (kb) 563 564 565Strain fitness (log2 ratio) -1 0 1 2 3 4at 563.238 kb on - strandat 563.340 kb on + strand, within ABID97_RS02765at 563.340 kb on + strand, within ABID97_RS02765at 563.340 kb on + strand, within ABID97_RS02765at 563.341 kb on - strand, within ABID97_RS02765at 564.136 kb on + strand, within ABID97_RS02770at 564.286 kb on + strand, within ABID97_RS02770at 564.485 kb on + strand, within ABID97_RS02770at 565.006 kb on - strand, within ABID97_RS02775at 565.023 kb on + strand, within ABID97_RS02775at 565.024 kb on - strand, within ABID97_RS02775at 565.564 kb on - strand, within ABID97_RS02775at 565.596 kb on - strand, within ABID97_RS02775at 565.621 kb on - strand, within ABID97_RS02775at 565.669 kb on - strand, within ABID97_RS02775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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563,238 - -0.1
563,340 + ABID97_RS02765 0.12 +4.3
563,340 + ABID97_RS02765 0.12 -0.1
563,340 + ABID97_RS02765 0.12 -0.4
563,341 - ABID97_RS02765 0.12 -1.1
564,136 + ABID97_RS02770 0.34 +0.2
564,286 + ABID97_RS02770 0.50 +0.3
564,485 + ABID97_RS02770 0.71 +0.6
565,006 - ABID97_RS02775 0.11 -0.4
565,023 + ABID97_RS02775 0.12 -0.6
565,024 - ABID97_RS02775 0.12 -0.9
565,564 - ABID97_RS02775 0.38 -0.4
565,596 - ABID97_RS02775 0.40 -1.4
565,621 - ABID97_RS02775 0.41 -1.3
565,669 - ABID97_RS02775 0.43 -1.2

Or see this region's nucleotide sequence