Experiment: nitrite 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3438 and Shewana3_3439 are separated by 122 nucleotides Shewana3_3439 and Shewana3_3440 are separated by 300 nucleotides
Shewana3_3438: Shewana3_3438 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 4,116,555 to 4,121,108
_3438
Shewana3_3439: Shewana3_3439 - LysR family transcriptional regulator (RefSeq), at 4,121,231 to 4,122,142
_3439
Shewana3_3440: Shewana3_3440 - penicillin-binding protein, transpeptidase (RefSeq), at 4,122,443 to 4,123,240
_3440
Position (kb) 4121
4122
4123 Strain fitness (log2 ratio) -2
-1
0
1 at 4121.187 kb on - strand at 4121.245 kb on - strand at 4121.643 kb on - strand, within Shewana3_3439 at 4121.679 kb on + strand, within Shewana3_3439 at 4121.687 kb on - strand, within Shewana3_3439 at 4121.839 kb on + strand, within Shewana3_3439 at 4122.138 kb on + strand at 4122.212 kb on + strand at 4122.286 kb on - strand at 4122.319 kb on + strand at 4122.493 kb on - strand at 4122.496 kb on + strand at 4122.497 kb on + strand at 4122.704 kb on + strand, within Shewana3_3440 at 4122.717 kb on - strand, within Shewana3_3440 at 4122.893 kb on - strand, within Shewana3_3440 at 4122.986 kb on - strand, within Shewana3_3440 at 4122.986 kb on - strand, within Shewana3_3440 at 4122.998 kb on - strand, within Shewana3_3440 at 4123.095 kb on - strand, within Shewana3_3440
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 7.5 mM remove 4,121,187 - +1.6 4,121,245 - -0.7 4,121,643 - Shewana3_3439 0.45 -1.2 4,121,679 + Shewana3_3439 0.49 +0.6 4,121,687 - Shewana3_3439 0.50 +0.0 4,121,839 + Shewana3_3439 0.67 -0.4 4,122,138 + +0.2 4,122,212 + +0.7 4,122,286 - -0.3 4,122,319 + +0.1 4,122,493 - +0.8 4,122,496 + -0.1 4,122,497 + +0.2 4,122,704 + Shewana3_3440 0.33 -1.8 4,122,717 - Shewana3_3440 0.34 +0.4 4,122,893 - Shewana3_3440 0.56 +0.5 4,122,986 - Shewana3_3440 0.68 +0.1 4,122,986 - Shewana3_3440 0.68 -0.2 4,122,998 - Shewana3_3440 0.70 +0.2 4,123,095 - Shewana3_3440 0.82 +0.0
Or see this region's nucleotide sequence