Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2736

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2735 and Pf1N1B4_2736 are separated by 78 nucleotidesPf1N1B4_2736 and Pf1N1B4_2737 are separated by 117 nucleotides Pf1N1B4_2735 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,073,276 to 3,074,202 _2735 Pf1N1B4_2736 - ATP-dependent RNA helicase PA3950, at 3,074,281 to 3,075,615 _2736 Pf1N1B4_2737 - NAD(FAD)-utilizing dehydrogenases, at 3,075,733 to 3,077,010 _2737 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3073.330 kb on + strandat 3073.330 kb on + strandat 3073.330 kb on + strandat 3073.330 kb on + strandat 3073.330 kb on + strandat 3073.331 kb on - strandat 3073.331 kb on - strandat 3073.331 kb on - strandat 3073.331 kb on - strandat 3073.351 kb on + strandat 3073.351 kb on + strandat 3073.351 kb on + strandat 3073.351 kb on + strandat 3073.351 kb on + strandat 3073.351 kb on + strandat 3073.435 kb on + strand, within Pf1N1B4_2735at 3073.608 kb on + strand, within Pf1N1B4_2735at 3073.609 kb on - strand, within Pf1N1B4_2735at 3073.641 kb on + strand, within Pf1N1B4_2735at 3073.645 kb on - strand, within Pf1N1B4_2735at 3073.931 kb on - strand, within Pf1N1B4_2735at 3073.931 kb on - strand, within Pf1N1B4_2735at 3073.969 kb on + strand, within Pf1N1B4_2735at 3073.969 kb on + strand, within Pf1N1B4_2735at 3073.969 kb on + strand, within Pf1N1B4_2735at 3073.969 kb on + strand, within Pf1N1B4_2735at 3073.970 kb on - strand, within Pf1N1B4_2735at 3073.975 kb on + strand, within Pf1N1B4_2735at 3073.975 kb on + strand, within Pf1N1B4_2735at 3073.975 kb on + strand, within Pf1N1B4_2735at 3073.975 kb on + strand, within Pf1N1B4_2735at 3073.975 kb on + strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3073.976 kb on - strand, within Pf1N1B4_2735at 3074.014 kb on + strand, within Pf1N1B4_2735at 3074.014 kb on + strand, within Pf1N1B4_2735at 3074.015 kb on - strand, within Pf1N1B4_2735at 3074.015 kb on - strand, within Pf1N1B4_2735at 3074.021 kb on - strand, within Pf1N1B4_2735at 3074.021 kb on - strand, within Pf1N1B4_2735at 3074.080 kb on - strand, within Pf1N1B4_2735at 3074.596 kb on + strand, within Pf1N1B4_2736at 3074.606 kb on - strand, within Pf1N1B4_2736at 3074.606 kb on - strand, within Pf1N1B4_2736at 3074.970 kb on + strand, within Pf1N1B4_2736at 3075.177 kb on - strand, within Pf1N1B4_2736at 3075.263 kb on - strand, within Pf1N1B4_2736at 3075.263 kb on - strand, within Pf1N1B4_2736at 3075.570 kb on + strandat 3075.585 kb on + strandat 3075.600 kb on + strandat 3075.606 kb on + strandat 3075.606 kb on + strandat 3075.606 kb on + strandat 3075.606 kb on + strandat 3075.865 kb on + strand, within Pf1N1B4_2737at 3075.865 kb on + strand, within Pf1N1B4_2737at 3075.865 kb on + strand, within Pf1N1B4_2737at 3075.865 kb on + strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3075.866 kb on - strand, within Pf1N1B4_2737at 3076.006 kb on - strand, within Pf1N1B4_2737at 3076.064 kb on - strand, within Pf1N1B4_2737at 3076.064 kb on - strand, within Pf1N1B4_2737at 3076.064 kb on - strand, within Pf1N1B4_2737at 3076.114 kb on + strand, within Pf1N1B4_2737at 3076.131 kb on + strand, within Pf1N1B4_2737at 3076.132 kb on - strand, within Pf1N1B4_2737at 3076.220 kb on + strand, within Pf1N1B4_2737at 3076.220 kb on + strand, within Pf1N1B4_2737at 3076.221 kb on - strand, within Pf1N1B4_2737at 3076.221 kb on - strand, within Pf1N1B4_2737at 3076.221 kb on - strand, within Pf1N1B4_2737at 3076.221 kb on - strand, within Pf1N1B4_2737at 3076.221 kb on - strand, within Pf1N1B4_2737at 3076.399 kb on + strand, within Pf1N1B4_2737at 3076.400 kb on - strand, within Pf1N1B4_2737at 3076.400 kb on - strand, within Pf1N1B4_2737at 3076.400 kb on - strand, within Pf1N1B4_2737at 3076.576 kb on - strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.579 kb on + strand, within Pf1N1B4_2737at 3076.580 kb on - strand, within Pf1N1B4_2737at 3076.580 kb on - strand, within Pf1N1B4_2737at 3076.580 kb on - strand, within Pf1N1B4_2737at 3076.580 kb on - strand, within Pf1N1B4_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,073,330 + +0.2
3,073,330 + -3.0
3,073,330 + +0.2
3,073,330 + -0.6
3,073,330 + -1.4
3,073,331 - +1.2
3,073,331 - -0.4
3,073,331 - -0.4
3,073,331 - -0.2
3,073,351 + -0.8
3,073,351 + -1.6
3,073,351 + -0.4
3,073,351 + -0.3
3,073,351 + +0.7
3,073,351 + -0.6
3,073,435 + Pf1N1B4_2735 0.17 -1.4
3,073,608 + Pf1N1B4_2735 0.36 +0.6
3,073,609 - Pf1N1B4_2735 0.36 -0.4
3,073,641 + Pf1N1B4_2735 0.39 +0.8
3,073,645 - Pf1N1B4_2735 0.40 +2.5
3,073,931 - Pf1N1B4_2735 0.71 +0.6
3,073,931 - Pf1N1B4_2735 0.71 -1.2
3,073,969 + Pf1N1B4_2735 0.75 +0.4
3,073,969 + Pf1N1B4_2735 0.75 +1.4
3,073,969 + Pf1N1B4_2735 0.75 -0.6
3,073,969 + Pf1N1B4_2735 0.75 -0.4
3,073,970 - Pf1N1B4_2735 0.75 -0.8
3,073,975 + Pf1N1B4_2735 0.75 -0.6
3,073,975 + Pf1N1B4_2735 0.75 +1.4
3,073,975 + Pf1N1B4_2735 0.75 -1.4
3,073,975 + Pf1N1B4_2735 0.75 +1.2
3,073,975 + Pf1N1B4_2735 0.75 -2.2
3,073,976 - Pf1N1B4_2735 0.76 -0.9
3,073,976 - Pf1N1B4_2735 0.76 +0.7
3,073,976 - Pf1N1B4_2735 0.76 +0.6
3,073,976 - Pf1N1B4_2735 0.76 -0.7
3,073,976 - Pf1N1B4_2735 0.76 +0.2
3,073,976 - Pf1N1B4_2735 0.76 -0.5
3,073,976 - Pf1N1B4_2735 0.76 -0.8
3,073,976 - Pf1N1B4_2735 0.76 +1.4
3,073,976 - Pf1N1B4_2735 0.76 -0.4
3,073,976 - Pf1N1B4_2735 0.76 +2.9
3,073,976 - Pf1N1B4_2735 0.76 -0.7
3,074,014 + Pf1N1B4_2735 0.80 -0.4
3,074,014 + Pf1N1B4_2735 0.80 +1.2
3,074,015 - Pf1N1B4_2735 0.80 +0.7
3,074,015 - Pf1N1B4_2735 0.80 -2.3
3,074,021 - Pf1N1B4_2735 0.80 -0.6
3,074,021 - Pf1N1B4_2735 0.80 -0.2
3,074,080 - Pf1N1B4_2735 0.87 +0.8
3,074,596 + Pf1N1B4_2736 0.24 -1.0
3,074,606 - Pf1N1B4_2736 0.24 -1.6
3,074,606 - Pf1N1B4_2736 0.24 -0.4
3,074,970 + Pf1N1B4_2736 0.52 -0.6
3,075,177 - Pf1N1B4_2736 0.67 -0.2
3,075,263 - Pf1N1B4_2736 0.74 +1.2
3,075,263 - Pf1N1B4_2736 0.74 +0.7
3,075,570 + +0.6
3,075,585 + -2.2
3,075,600 + +0.2
3,075,606 + +0.8
3,075,606 + -0.6
3,075,606 + +1.6
3,075,606 + +0.5
3,075,865 + Pf1N1B4_2737 0.10 -0.4
3,075,865 + Pf1N1B4_2737 0.10 +0.2
3,075,865 + Pf1N1B4_2737 0.10 +0.5
3,075,865 + Pf1N1B4_2737 0.10 -0.2
3,075,866 - Pf1N1B4_2737 0.10 +0.4
3,075,866 - Pf1N1B4_2737 0.10 -0.4
3,075,866 - Pf1N1B4_2737 0.10 +1.4
3,075,866 - Pf1N1B4_2737 0.10 +2.2
3,075,866 - Pf1N1B4_2737 0.10 -0.8
3,075,866 - Pf1N1B4_2737 0.10 +0.9
3,075,866 - Pf1N1B4_2737 0.10 +1.2
3,075,866 - Pf1N1B4_2737 0.10 +0.8
3,075,866 - Pf1N1B4_2737 0.10 +2.5
3,076,006 - Pf1N1B4_2737 0.21 +2.0
3,076,064 - Pf1N1B4_2737 0.26 +0.5
3,076,064 - Pf1N1B4_2737 0.26 -0.4
3,076,064 - Pf1N1B4_2737 0.26 +1.2
3,076,114 + Pf1N1B4_2737 0.30 -0.8
3,076,131 + Pf1N1B4_2737 0.31 -0.8
3,076,132 - Pf1N1B4_2737 0.31 -1.1
3,076,220 + Pf1N1B4_2737 0.38 +0.2
3,076,220 + Pf1N1B4_2737 0.38 -1.2
3,076,221 - Pf1N1B4_2737 0.38 +0.6
3,076,221 - Pf1N1B4_2737 0.38 +1.2
3,076,221 - Pf1N1B4_2737 0.38 -0.4
3,076,221 - Pf1N1B4_2737 0.38 -1.1
3,076,221 - Pf1N1B4_2737 0.38 +0.2
3,076,399 + Pf1N1B4_2737 0.52 +0.2
3,076,400 - Pf1N1B4_2737 0.52 +0.4
3,076,400 - Pf1N1B4_2737 0.52 +1.2
3,076,400 - Pf1N1B4_2737 0.52 -1.4
3,076,576 - Pf1N1B4_2737 0.66 -0.1
3,076,579 + Pf1N1B4_2737 0.66 +0.2
3,076,579 + Pf1N1B4_2737 0.66 +1.2
3,076,579 + Pf1N1B4_2737 0.66 -1.1
3,076,579 + Pf1N1B4_2737 0.66 -0.6
3,076,579 + Pf1N1B4_2737 0.66 -0.2
3,076,579 + Pf1N1B4_2737 0.66 -0.8
3,076,579 + Pf1N1B4_2737 0.66 -0.6
3,076,580 - Pf1N1B4_2737 0.66 -0.4
3,076,580 - Pf1N1B4_2737 0.66 -1.6
3,076,580 - Pf1N1B4_2737 0.66 +0.9
3,076,580 - Pf1N1B4_2737 0.66 -0.4

Or see this region's nucleotide sequence