Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2735 and Pf1N1B4_2736 are separated by 78 nucleotides Pf1N1B4_2736 and Pf1N1B4_2737 are separated by 117 nucleotides
Pf1N1B4_2735 - Permease of the drug/metabolite transporter (DMT) superfamily, at 3,073,276 to 3,074,202
_2735
Pf1N1B4_2736 - ATP-dependent RNA helicase PA3950, at 3,074,281 to 3,075,615
_2736
Pf1N1B4_2737 - NAD(FAD)-utilizing dehydrogenases, at 3,075,733 to 3,077,010
_2737
Position (kb)
3074
3075
3076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.330 kb on + strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.331 kb on - strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.351 kb on + strand at 3073.435 kb on + strand, within Pf1N1B4_2735 at 3073.608 kb on + strand, within Pf1N1B4_2735 at 3073.609 kb on - strand, within Pf1N1B4_2735 at 3073.641 kb on + strand, within Pf1N1B4_2735 at 3073.645 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.931 kb on - strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.969 kb on + strand, within Pf1N1B4_2735 at 3073.970 kb on - strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.975 kb on + strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3073.976 kb on - strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.014 kb on + strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.015 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.021 kb on - strand, within Pf1N1B4_2735 at 3074.080 kb on - strand, within Pf1N1B4_2735 at 3074.596 kb on + strand, within Pf1N1B4_2736 at 3074.606 kb on - strand, within Pf1N1B4_2736 at 3074.606 kb on - strand, within Pf1N1B4_2736 at 3074.970 kb on + strand, within Pf1N1B4_2736 at 3075.177 kb on - strand, within Pf1N1B4_2736 at 3075.263 kb on - strand, within Pf1N1B4_2736 at 3075.263 kb on - strand, within Pf1N1B4_2736 at 3075.570 kb on + strand at 3075.585 kb on + strand at 3075.600 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.606 kb on + strand at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.865 kb on + strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3075.866 kb on - strand, within Pf1N1B4_2737 at 3076.006 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.064 kb on - strand, within Pf1N1B4_2737 at 3076.114 kb on + strand, within Pf1N1B4_2737 at 3076.131 kb on + strand, within Pf1N1B4_2737 at 3076.132 kb on - strand, within Pf1N1B4_2737 at 3076.220 kb on + strand, within Pf1N1B4_2737 at 3076.220 kb on + strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.221 kb on - strand, within Pf1N1B4_2737 at 3076.399 kb on + strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.400 kb on - strand, within Pf1N1B4_2737 at 3076.576 kb on - strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.579 kb on + strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737 at 3076.580 kb on - strand, within Pf1N1B4_2737
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,073,330 + +0.2 3,073,330 + -3.0 3,073,330 + +0.2 3,073,330 + -0.6 3,073,330 + -1.4 3,073,331 - +1.2 3,073,331 - -0.4 3,073,331 - -0.4 3,073,331 - -0.2 3,073,351 + -0.8 3,073,351 + -1.6 3,073,351 + -0.4 3,073,351 + -0.3 3,073,351 + +0.7 3,073,351 + -0.6 3,073,435 + Pf1N1B4_2735 0.17 -1.4 3,073,608 + Pf1N1B4_2735 0.36 +0.6 3,073,609 - Pf1N1B4_2735 0.36 -0.4 3,073,641 + Pf1N1B4_2735 0.39 +0.8 3,073,645 - Pf1N1B4_2735 0.40 +2.5 3,073,931 - Pf1N1B4_2735 0.71 +0.6 3,073,931 - Pf1N1B4_2735 0.71 -1.2 3,073,969 + Pf1N1B4_2735 0.75 +0.4 3,073,969 + Pf1N1B4_2735 0.75 +1.4 3,073,969 + Pf1N1B4_2735 0.75 -0.6 3,073,969 + Pf1N1B4_2735 0.75 -0.4 3,073,970 - Pf1N1B4_2735 0.75 -0.8 3,073,975 + Pf1N1B4_2735 0.75 -0.6 3,073,975 + Pf1N1B4_2735 0.75 +1.4 3,073,975 + Pf1N1B4_2735 0.75 -1.4 3,073,975 + Pf1N1B4_2735 0.75 +1.2 3,073,975 + Pf1N1B4_2735 0.75 -2.2 3,073,976 - Pf1N1B4_2735 0.76 -0.9 3,073,976 - Pf1N1B4_2735 0.76 +0.7 3,073,976 - Pf1N1B4_2735 0.76 +0.6 3,073,976 - Pf1N1B4_2735 0.76 -0.7 3,073,976 - Pf1N1B4_2735 0.76 +0.2 3,073,976 - Pf1N1B4_2735 0.76 -0.5 3,073,976 - Pf1N1B4_2735 0.76 -0.8 3,073,976 - Pf1N1B4_2735 0.76 +1.4 3,073,976 - Pf1N1B4_2735 0.76 -0.4 3,073,976 - Pf1N1B4_2735 0.76 +2.9 3,073,976 - Pf1N1B4_2735 0.76 -0.7 3,074,014 + Pf1N1B4_2735 0.80 -0.4 3,074,014 + Pf1N1B4_2735 0.80 +1.2 3,074,015 - Pf1N1B4_2735 0.80 +0.7 3,074,015 - Pf1N1B4_2735 0.80 -2.3 3,074,021 - Pf1N1B4_2735 0.80 -0.6 3,074,021 - Pf1N1B4_2735 0.80 -0.2 3,074,080 - Pf1N1B4_2735 0.87 +0.8 3,074,596 + Pf1N1B4_2736 0.24 -1.0 3,074,606 - Pf1N1B4_2736 0.24 -1.6 3,074,606 - Pf1N1B4_2736 0.24 -0.4 3,074,970 + Pf1N1B4_2736 0.52 -0.6 3,075,177 - Pf1N1B4_2736 0.67 -0.2 3,075,263 - Pf1N1B4_2736 0.74 +1.2 3,075,263 - Pf1N1B4_2736 0.74 +0.7 3,075,570 + +0.6 3,075,585 + -2.2 3,075,600 + +0.2 3,075,606 + +0.8 3,075,606 + -0.6 3,075,606 + +1.6 3,075,606 + +0.5 3,075,865 + Pf1N1B4_2737 0.10 -0.4 3,075,865 + Pf1N1B4_2737 0.10 +0.2 3,075,865 + Pf1N1B4_2737 0.10 +0.5 3,075,865 + Pf1N1B4_2737 0.10 -0.2 3,075,866 - Pf1N1B4_2737 0.10 +0.4 3,075,866 - Pf1N1B4_2737 0.10 -0.4 3,075,866 - Pf1N1B4_2737 0.10 +1.4 3,075,866 - Pf1N1B4_2737 0.10 +2.2 3,075,866 - Pf1N1B4_2737 0.10 -0.8 3,075,866 - Pf1N1B4_2737 0.10 +0.9 3,075,866 - Pf1N1B4_2737 0.10 +1.2 3,075,866 - Pf1N1B4_2737 0.10 +0.8 3,075,866 - Pf1N1B4_2737 0.10 +2.5 3,076,006 - Pf1N1B4_2737 0.21 +2.0 3,076,064 - Pf1N1B4_2737 0.26 +0.5 3,076,064 - Pf1N1B4_2737 0.26 -0.4 3,076,064 - Pf1N1B4_2737 0.26 +1.2 3,076,114 + Pf1N1B4_2737 0.30 -0.8 3,076,131 + Pf1N1B4_2737 0.31 -0.8 3,076,132 - Pf1N1B4_2737 0.31 -1.1 3,076,220 + Pf1N1B4_2737 0.38 +0.2 3,076,220 + Pf1N1B4_2737 0.38 -1.2 3,076,221 - Pf1N1B4_2737 0.38 +0.6 3,076,221 - Pf1N1B4_2737 0.38 +1.2 3,076,221 - Pf1N1B4_2737 0.38 -0.4 3,076,221 - Pf1N1B4_2737 0.38 -1.1 3,076,221 - Pf1N1B4_2737 0.38 +0.2 3,076,399 + Pf1N1B4_2737 0.52 +0.2 3,076,400 - Pf1N1B4_2737 0.52 +0.4 3,076,400 - Pf1N1B4_2737 0.52 +1.2 3,076,400 - Pf1N1B4_2737 0.52 -1.4 3,076,576 - Pf1N1B4_2737 0.66 -0.1 3,076,579 + Pf1N1B4_2737 0.66 +0.2 3,076,579 + Pf1N1B4_2737 0.66 +1.2 3,076,579 + Pf1N1B4_2737 0.66 -1.1 3,076,579 + Pf1N1B4_2737 0.66 -0.6 3,076,579 + Pf1N1B4_2737 0.66 -0.2 3,076,579 + Pf1N1B4_2737 0.66 -0.8 3,076,579 + Pf1N1B4_2737 0.66 -0.6 3,076,580 - Pf1N1B4_2737 0.66 -0.4 3,076,580 - Pf1N1B4_2737 0.66 -1.6 3,076,580 - Pf1N1B4_2737 0.66 +0.9 3,076,580 - Pf1N1B4_2737 0.66 -0.4
Or see this region's nucleotide sequence