Strain Fitness in Shewanella loihica PV-4 around Shew_1516

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1515 and Shew_1516 are separated by 313 nucleotidesShew_1516 and Shew_1517 are separated by 135 nucleotidesShew_1517 and Shew_1518 are separated by 281 nucleotides Shew_1515: Shew_1515 - Na+/H+ antiporter NhaC (RefSeq), at 1,737,706 to 1,739,025 _1515 Shew_1516: Shew_1516 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 1,739,339 to 1,739,944 _1516 Shew_1517: Shew_1517 - putative adenylyl cyclase CyaB (RefSeq), at 1,740,080 to 1,740,661 _1517 Shew_1518: Shew_1518 - hypothetical protein (RefSeq), at 1,740,943 to 1,741,689 _1518 Position (kb) 1739 1740Strain fitness (log2 ratio) -1 0 1at 1738.563 kb on + strand, within Shew_1515at 1738.624 kb on + strand, within Shew_1515at 1738.988 kb on - strandat 1739.083 kb on - strandat 1739.093 kb on - strandat 1739.164 kb on + strandat 1739.387 kb on + strandat 1740.325 kb on + strand, within Shew_1517at 1740.421 kb on - strand, within Shew_1517at 1740.421 kb on - strand, within Shew_1517at 1740.612 kb on + strandat 1740.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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1,738,563 + Shew_1515 0.65 -1.3
1,738,624 + Shew_1515 0.70 -0.3
1,738,988 - -1.0
1,739,083 - +0.2
1,739,093 - +1.5
1,739,164 + -0.5
1,739,387 + -0.2
1,740,325 + Shew_1517 0.42 -0.1
1,740,421 - Shew_1517 0.59 +1.1
1,740,421 - Shew_1517 0.59 -1.3
1,740,612 + -0.2
1,740,839 + -1.3

Or see this region's nucleotide sequence