Strain Fitness in Shewanella loihica PV-4 around Shew_0504

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0502 and Shew_0503 are separated by 5 nucleotidesShew_0503 and Shew_0504 are separated by 264 nucleotidesShew_0504 and Shew_0505 are separated by 56 nucleotides Shew_0502: Shew_0502 - hypothetical protein (RefSeq), at 560,738 to 561,265 _0502 Shew_0503: Shew_0503 - thioredoxin domain-containing protein (RefSeq), at 561,271 to 561,612 _0503 Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088 _0504 Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503 _0505 Position (kb) 561 562 563 564Strain fitness (log2 ratio) -1 0 1at 561.393 kb on - strand, within Shew_0503at 561.401 kb on - strand, within Shew_0503at 561.615 kb on + strandat 561.621 kb on + strandat 561.623 kb on - strandat 561.678 kb on - strandat 561.805 kb on + strandat 561.808 kb on - strandat 561.808 kb on - strandat 561.808 kb on - strandat 561.808 kb on - strandat 562.331 kb on + strand, within Shew_0504at 562.518 kb on + strand, within Shew_0504at 562.518 kb on + strand, within Shew_0504at 562.746 kb on - strand, within Shew_0504at 562.847 kb on + strand, within Shew_0504at 562.872 kb on - strand, within Shew_0504at 563.274 kb on + strandat 563.369 kb on + strand, within Shew_0505at 563.404 kb on + strand, within Shew_0505at 563.404 kb on + strand, within Shew_0505at 563.404 kb on + strand, within Shew_0505at 563.607 kb on + strand, within Shew_0505at 563.831 kb on + strand, within Shew_0505at 563.969 kb on + strand, within Shew_0505at 563.969 kb on + strand, within Shew_0505at 563.977 kb on - strand, within Shew_0505at 563.988 kb on - strand, within Shew_0505

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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561,393 - Shew_0503 0.36 -0.3
561,401 - Shew_0503 0.38 -0.3
561,615 + -0.0
561,621 + +0.3
561,623 - +0.1
561,678 - +0.9
561,805 + -0.1
561,808 - +0.1
561,808 - -0.7
561,808 - -0.0
561,808 - -1.2
562,331 + Shew_0504 0.37 +0.3
562,518 + Shew_0504 0.53 +0.6
562,518 + Shew_0504 0.53 -0.3
562,746 - Shew_0504 0.72 -0.8
562,847 + Shew_0504 0.80 -1.0
562,872 - Shew_0504 0.82 +0.5
563,274 + +0.0
563,369 + Shew_0505 0.16 -0.0
563,404 + Shew_0505 0.19 -0.5
563,404 + Shew_0505 0.19 -0.6
563,404 + Shew_0505 0.19 +1.0
563,607 + Shew_0505 0.34 -0.3
563,831 + Shew_0505 0.50 -0.8
563,969 + Shew_0505 0.61 +0.0
563,969 + Shew_0505 0.61 -0.1
563,977 - Shew_0505 0.61 -0.4
563,988 - Shew_0505 0.62 +0.1

Or see this region's nucleotide sequence