Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0502 and Shew_0503 are separated by 5 nucleotides Shew_0503 and Shew_0504 are separated by 264 nucleotides Shew_0504 and Shew_0505 are separated by 56 nucleotides
Shew_0502: Shew_0502 - hypothetical protein (RefSeq), at 560,738 to 561,265
_0502
Shew_0503: Shew_0503 - thioredoxin domain-containing protein (RefSeq), at 561,271 to 561,612
_0503
Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088
_0504
Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503
_0505
Position (kb)
561
562
563
564 Strain fitness (log2 ratio)
-1
0
1 at 561.393 kb on - strand, within Shew_0503 at 561.401 kb on - strand, within Shew_0503 at 561.615 kb on + strand at 561.621 kb on + strand at 561.623 kb on - strand at 561.678 kb on - strand at 561.805 kb on + strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 562.331 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.746 kb on - strand, within Shew_0504 at 562.847 kb on + strand, within Shew_0504 at 562.872 kb on - strand, within Shew_0504 at 563.274 kb on + strand at 563.369 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.607 kb on + strand, within Shew_0505 at 563.831 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.977 kb on - strand, within Shew_0505 at 563.988 kb on - strand, within Shew_0505
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 561,393 - Shew_0503 0.36 -0.3 561,401 - Shew_0503 0.38 -0.3 561,615 + -0.0 561,621 + +0.3 561,623 - +0.1 561,678 - +0.9 561,805 + -0.1 561,808 - +0.1 561,808 - -0.7 561,808 - -0.0 561,808 - -1.2 562,331 + Shew_0504 0.37 +0.3 562,518 + Shew_0504 0.53 +0.6 562,518 + Shew_0504 0.53 -0.3 562,746 - Shew_0504 0.72 -0.8 562,847 + Shew_0504 0.80 -1.0 562,872 - Shew_0504 0.82 +0.5 563,274 + +0.0 563,369 + Shew_0505 0.16 -0.0 563,404 + Shew_0505 0.19 -0.5 563,404 + Shew_0505 0.19 -0.6 563,404 + Shew_0505 0.19 +1.0 563,607 + Shew_0505 0.34 -0.3 563,831 + Shew_0505 0.50 -0.8 563,969 + Shew_0505 0.61 +0.0 563,969 + Shew_0505 0.61 -0.1 563,977 - Shew_0505 0.61 -0.4 563,988 - Shew_0505 0.62 +0.1
Or see this region's nucleotide sequence