Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6047

Experiment: Phosphomycin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6046 and Pf6N2E2_6047 are separated by 330 nucleotidesPf6N2E2_6047 and Pf6N2E2_6048 are separated by 56 nucleotidesPf6N2E2_6048 and Pf6N2E2_6049 are separated by 355 nucleotides Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778 _6046 Pf6N2E2_6047 - hypothetical protein, at 6,867,109 to 6,867,405 _6047 Pf6N2E2_6048 - hypothetical protein, at 6,867,462 to 6,867,776 _6048 Pf6N2E2_6049 - hydrolase, haloacid dehalogenase-like family, at 6,868,132 to 6,868,827 _6049 Position (kb) 6867 6868Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 6866.119 kb on - strandat 6866.119 kb on - strandat 6866.127 kb on - strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.213 kb on + strandat 6866.213 kb on + strandat 6866.214 kb on - strandat 6866.254 kb on - strandat 6866.306 kb on + strandat 6866.364 kb on + strandat 6866.365 kb on - strandat 6866.365 kb on - strandat 6866.393 kb on + strandat 6866.405 kb on + strandat 6866.405 kb on + strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.753 kb on - strandat 6866.753 kb on - strandat 6867.002 kb on - strandat 6867.002 kb on - strandat 6867.003 kb on + strandat 6867.003 kb on + strandat 6867.003 kb on + strandat 6867.003 kb on + strandat 6867.003 kb on + strandat 6867.003 kb on + strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.004 kb on - strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.084 kb on + strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.085 kb on - strandat 6867.105 kb on + strandat 6867.105 kb on + strandat 6867.105 kb on + strandat 6867.105 kb on + strandat 6867.105 kb on + strandat 6867.106 kb on - strandat 6867.106 kb on - strandat 6867.106 kb on - strandat 6867.106 kb on - strandat 6867.247 kb on + strand, within Pf6N2E2_6047at 6867.324 kb on - strand, within Pf6N2E2_6047at 6867.467 kb on + strandat 6867.874 kb on + strandat 6867.955 kb on - strandat 6868.216 kb on + strand, within Pf6N2E2_6049at 6868.216 kb on + strand, within Pf6N2E2_6049at 6868.216 kb on + strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.217 kb on - strand, within Pf6N2E2_6049at 6868.319 kb on - strand, within Pf6N2E2_6049at 6868.319 kb on - strand, within Pf6N2E2_6049

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.004 mg/ml
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6,866,119 - +1.2
6,866,119 - -0.2
6,866,127 - +0.5
6,866,181 + -0.4
6,866,181 + -0.1
6,866,181 + +0.3
6,866,181 + +0.4
6,866,181 + -1.6
6,866,182 - -0.1
6,866,182 - +0.1
6,866,182 - +0.9
6,866,185 + +0.5
6,866,185 + +0.7
6,866,185 + -0.4
6,866,185 + +0.7
6,866,185 + +0.8
6,866,185 + +0.6
6,866,186 - +0.3
6,866,186 - +0.7
6,866,186 - +0.6
6,866,186 - -0.1
6,866,186 - +0.0
6,866,186 - +1.5
6,866,186 - -0.9
6,866,186 - +0.2
6,866,213 + -0.0
6,866,213 + -0.4
6,866,214 - -0.2
6,866,254 - +0.3
6,866,306 + +0.9
6,866,364 + -0.8
6,866,365 - +0.4
6,866,365 - +1.0
6,866,393 + +0.1
6,866,405 + +0.4
6,866,405 + +0.4
6,866,406 - -0.7
6,866,406 - -0.1
6,866,406 - +1.3
6,866,406 - -1.2
6,866,406 - +0.8
6,866,471 + Pf6N2E2_6046 0.25 +1.0
6,866,471 + Pf6N2E2_6046 0.25 +1.1
6,866,471 + Pf6N2E2_6046 0.25 -0.5
6,866,472 - Pf6N2E2_6046 0.25 -1.0
6,866,472 - Pf6N2E2_6046 0.25 +0.9
6,866,472 - Pf6N2E2_6046 0.25 -0.1
6,866,753 - +1.6
6,866,753 - -0.2
6,867,002 - -1.2
6,867,002 - -1.1
6,867,003 + +0.9
6,867,003 + -0.4
6,867,003 + -1.0
6,867,003 + -0.6
6,867,003 + +1.0
6,867,003 + +0.4
6,867,004 - +1.3
6,867,004 - -0.2
6,867,004 - +0.2
6,867,004 - -1.1
6,867,004 - -0.3
6,867,004 - -0.4
6,867,004 - +2.4
6,867,004 - -0.4
6,867,004 - -1.2
6,867,004 - -1.2
6,867,004 - +0.2
6,867,004 - -1.4
6,867,004 - -0.5
6,867,084 + -0.8
6,867,084 + -3.0
6,867,084 + +0.5
6,867,084 + +0.1
6,867,084 + +0.0
6,867,084 + -0.2
6,867,084 + +1.6
6,867,084 + +0.1
6,867,084 + -0.3
6,867,084 + +2.8
6,867,084 + +1.2
6,867,084 + +0.9
6,867,084 + +1.2
6,867,085 - +0.1
6,867,085 - -0.9
6,867,085 - +0.0
6,867,085 - -0.7
6,867,085 - -0.3
6,867,085 - +0.6
6,867,085 - +0.7
6,867,105 + +1.2
6,867,105 + +0.6
6,867,105 + +0.0
6,867,105 + +0.6
6,867,105 + +0.3
6,867,106 - -1.0
6,867,106 - +1.3
6,867,106 - +0.1
6,867,106 - +1.2
6,867,247 + Pf6N2E2_6047 0.46 -0.6
6,867,324 - Pf6N2E2_6047 0.72 -0.6
6,867,467 + -0.3
6,867,874 + +0.2
6,867,955 - +0.4
6,868,216 + Pf6N2E2_6049 0.12 +0.4
6,868,216 + Pf6N2E2_6049 0.12 -0.4
6,868,216 + Pf6N2E2_6049 0.12 +0.5
6,868,217 - Pf6N2E2_6049 0.12 +1.0
6,868,217 - Pf6N2E2_6049 0.12 -0.9
6,868,217 - Pf6N2E2_6049 0.12 -3.5
6,868,217 - Pf6N2E2_6049 0.12 +0.3
6,868,217 - Pf6N2E2_6049 0.12 -0.1
6,868,217 - Pf6N2E2_6049 0.12 +1.3
6,868,319 - Pf6N2E2_6049 0.27 -0.5
6,868,319 - Pf6N2E2_6049 0.27 -0.4

Or see this region's nucleotide sequence