Experiment: L-Serine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01910 and AO353_01915 are separated by 103 nucleotides AO353_01915 and AO353_01920 are separated by 267 nucleotides AO353_01920 and AO353_01925 are separated by 145 nucleotides
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
AO353_01915: AO353_01915 - GlcG protein, at 404,394 to 404,834
_01915
AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877
_01920
AO353_01925: AO353_01925 - hydroxypyruvate isomerase, at 407,023 to 407,805
_01925
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910 at 404.187 kb on - strand at 404.246 kb on + strand at 404.246 kb on + strand at 404.272 kb on + strand at 404.273 kb on - strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.385 kb on + strand at 404.386 kb on - strand at 404.386 kb on - strand at 404.585 kb on + strand, within AO353_01915 at 404.739 kb on + strand, within AO353_01915 at 404.740 kb on - strand, within AO353_01915 at 404.823 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.905 kb on - strand at 404.949 kb on - strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.282 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.363 kb on + strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.523 kb on - strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.543 kb on + strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.544 kb on - strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.633 kb on + strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.634 kb on - strand, within AO353_01920 at 405.976 kb on - strand, within AO353_01920 at 406.033 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.227 kb on + strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.228 kb on - strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.266 kb on + strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.267 kb on - strand, within AO353_01920 at 406.320 kb on + strand, within AO353_01920 at 406.321 kb on - strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.440 kb on + strand, within AO353_01920 at 406.441 kb on - strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.497 kb on + strand, within AO353_01920 at 406.498 kb on - strand, within AO353_01920 at 406.524 kb on + strand, within AO353_01920 at 406.525 kb on - strand, within AO353_01920 at 406.525 kb on - strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.569 kb on + strand, within AO353_01920 at 406.570 kb on - strand, within AO353_01920 at 406.570 kb on - strand, within AO353_01920 at 406.637 kb on - strand, within AO353_01920 at 406.875 kb on + strand at 406.876 kb on - strand at 406.876 kb on - strand at 406.895 kb on + strand at 406.896 kb on - strand at 406.896 kb on - strand at 407.002 kb on + strand at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.122 kb on + strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.123 kb on - strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.299 kb on + strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.300 kb on - strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.404 kb on + strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.405 kb on - strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.482 kb on + strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.483 kb on - strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.551 kb on + strand, within AO353_01925 at 407.552 kb on - strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.560 kb on + strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.561 kb on - strand, within AO353_01925 at 407.683 kb on + strand, within AO353_01925 at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.743 kb on + strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.744 kb on - strand at 407.863 kb on + strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.864 kb on - strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.869 kb on + strand at 407.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (C) remove 404,138 + AO353_01910 0.86 -0.0 404,138 + AO353_01910 0.86 -0.7 404,139 - AO353_01910 0.86 -0.1 404,187 - +0.9 404,246 + -0.7 404,246 + +0.3 404,272 + -0.9 404,273 - +0.8 404,332 + -2.2 404,332 + -0.6 404,332 + -0.1 404,332 + -0.5 404,332 + +0.3 404,332 + +1.3 404,332 + -0.4 404,333 - +1.5 404,333 - -0.2 404,333 - +0.0 404,333 - +1.1 404,333 - -1.0 404,333 - -0.1 404,333 - -0.0 404,333 - +0.1 404,333 - -0.9 404,333 - -0.2 404,333 - -0.7 404,333 - +0.3 404,334 + -1.2 404,334 + -1.1 404,334 + +1.1 404,334 + -0.2 404,334 + +1.1 404,335 - -2.0 404,385 + -1.4 404,386 - -0.2 404,386 - -1.8 404,585 + AO353_01915 0.43 -0.1 404,739 + AO353_01915 0.78 +0.2 404,740 - AO353_01915 0.78 +0.7 404,823 + -1.2 404,847 + +0.5 404,847 + +1.1 404,847 + -0.0 404,847 + -1.4 404,848 - -0.5 404,848 - +1.3 404,848 - -1.0 404,905 - -0.9 404,949 - -1.1 404,975 + -0.3 404,975 + -0.1 404,975 + -0.5 404,975 + -0.8 404,975 + +1.3 404,976 - -1.5 404,976 - -0.9 404,976 - -0.2 404,979 + -0.6 404,979 + -1.3 404,979 + +0.5 404,979 + +0.5 404,980 - -0.2 404,980 - +0.8 404,980 - -0.5 404,980 - -0.5 404,980 - +0.8 404,980 - -0.6 404,980 - -0.5 405,045 + -1.1 405,045 + -0.7 405,045 + -0.2 405,045 + -0.8 405,045 + +1.2 405,045 + +0.2 405,045 + +0.5 405,045 + -1.2 405,045 + -1.6 405,045 + +1.1 405,046 - -0.2 405,046 - -0.9 405,046 - +0.1 405,046 - +0.4 405,046 - -0.6 405,046 - -1.1 405,046 - -0.0 405,046 - +1.3 405,202 - +0.3 405,202 - -1.0 405,202 - +2.1 405,282 + AO353_01920 0.10 -0.9 405,363 + AO353_01920 0.15 -0.5 405,363 + AO353_01920 0.15 -0.2 405,363 + AO353_01920 0.15 +1.1 405,523 - AO353_01920 0.24 +1.1 405,523 - AO353_01920 0.24 +0.4 405,543 + AO353_01920 0.25 +0.2 405,543 + AO353_01920 0.25 -0.9 405,543 + AO353_01920 0.25 -1.2 405,543 + AO353_01920 0.25 +0.3 405,543 + AO353_01920 0.25 -0.6 405,543 + AO353_01920 0.25 +1.7 405,543 + AO353_01920 0.25 -1.2 405,543 + AO353_01920 0.25 -0.2 405,543 + AO353_01920 0.25 -0.5 405,543 + AO353_01920 0.25 -0.6 405,543 + AO353_01920 0.25 -1.2 405,544 - AO353_01920 0.25 -0.9 405,544 - AO353_01920 0.25 +0.8 405,544 - AO353_01920 0.25 +1.0 405,544 - AO353_01920 0.25 +2.1 405,544 - AO353_01920 0.25 -0.3 405,544 - AO353_01920 0.25 -0.1 405,544 - AO353_01920 0.25 +0.7 405,544 - AO353_01920 0.25 +1.5 405,633 + AO353_01920 0.30 -0.7 405,633 + AO353_01920 0.30 -2.0 405,633 + AO353_01920 0.30 -0.8 405,634 - AO353_01920 0.30 -0.9 405,634 - AO353_01920 0.30 +0.5 405,634 - AO353_01920 0.30 +0.1 405,634 - AO353_01920 0.30 -2.9 405,976 - AO353_01920 0.49 -0.6 406,033 + AO353_01920 0.52 +0.1 406,227 + AO353_01920 0.63 -1.1 406,227 + AO353_01920 0.63 -0.5 406,227 + AO353_01920 0.63 +0.6 406,227 + AO353_01920 0.63 -1.4 406,228 - AO353_01920 0.63 -0.8 406,228 - AO353_01920 0.63 -1.2 406,228 - AO353_01920 0.63 +2.1 406,266 + AO353_01920 0.66 -0.4 406,266 + AO353_01920 0.66 +0.8 406,266 + AO353_01920 0.66 +0.8 406,266 + AO353_01920 0.66 +1.2 406,266 + AO353_01920 0.66 -0.2 406,267 - AO353_01920 0.66 -1.1 406,267 - AO353_01920 0.66 +2.7 406,267 - AO353_01920 0.66 -1.1 406,267 - AO353_01920 0.66 -0.5 406,267 - AO353_01920 0.66 -1.7 406,320 + AO353_01920 0.69 -0.9 406,321 - AO353_01920 0.69 -0.2 406,440 + AO353_01920 0.75 +0.1 406,440 + AO353_01920 0.75 -0.6 406,440 + AO353_01920 0.75 -0.2 406,441 - AO353_01920 0.75 +2.1 406,497 + AO353_01920 0.79 -1.6 406,497 + AO353_01920 0.79 -0.4 406,497 + AO353_01920 0.79 +1.3 406,497 + AO353_01920 0.79 -0.9 406,497 + AO353_01920 0.79 +0.1 406,497 + AO353_01920 0.79 +0.8 406,497 + AO353_01920 0.79 -0.2 406,498 - AO353_01920 0.79 -1.7 406,524 + AO353_01920 0.80 -0.8 406,525 - AO353_01920 0.80 +0.9 406,525 - AO353_01920 0.80 -0.1 406,569 + AO353_01920 0.83 +0.5 406,569 + AO353_01920 0.83 -0.7 406,569 + AO353_01920 0.83 +0.8 406,569 + AO353_01920 0.83 -1.9 406,569 + AO353_01920 0.83 -0.3 406,570 - AO353_01920 0.83 +0.8 406,570 - AO353_01920 0.83 +0.7 406,637 - AO353_01920 0.86 +0.1 406,875 + -0.3 406,876 - -0.5 406,876 - +0.1 406,895 + -0.4 406,896 - -0.0 406,896 - -0.1 407,002 + +1.1 407,122 + AO353_01925 0.13 +0.4 407,122 + AO353_01925 0.13 -0.8 407,122 + AO353_01925 0.13 +0.5 407,122 + AO353_01925 0.13 -0.2 407,122 + AO353_01925 0.13 -0.0 407,123 - AO353_01925 0.13 -0.4 407,123 - AO353_01925 0.13 +2.7 407,123 - AO353_01925 0.13 -0.7 407,299 + AO353_01925 0.35 -0.1 407,299 + AO353_01925 0.35 +0.9 407,300 - AO353_01925 0.35 +0.1 407,300 - AO353_01925 0.35 -0.5 407,300 - AO353_01925 0.35 +0.5 407,300 - AO353_01925 0.35 +0.7 407,404 + AO353_01925 0.49 +1.1 407,404 + AO353_01925 0.49 -0.9 407,404 + AO353_01925 0.49 +1.5 407,404 + AO353_01925 0.49 +1.3 407,404 + AO353_01925 0.49 -0.4 407,404 + AO353_01925 0.49 +0.5 407,404 + AO353_01925 0.49 -1.1 407,405 - AO353_01925 0.49 -1.1 407,405 - AO353_01925 0.49 -1.4 407,482 + AO353_01925 0.59 +1.3 407,482 + AO353_01925 0.59 +0.6 407,482 + AO353_01925 0.59 +0.4 407,482 + AO353_01925 0.59 -0.9 407,482 + AO353_01925 0.59 +0.6 407,482 + AO353_01925 0.59 +2.1 407,483 - AO353_01925 0.59 -0.2 407,483 - AO353_01925 0.59 +0.5 407,483 - AO353_01925 0.59 +0.3 407,483 - AO353_01925 0.59 +0.3 407,551 + AO353_01925 0.67 -0.2 407,551 + AO353_01925 0.67 +0.5 407,552 - AO353_01925 0.68 +1.1 407,560 + AO353_01925 0.69 -0.0 407,560 + AO353_01925 0.69 +1.3 407,560 + AO353_01925 0.69 +0.5 407,560 + AO353_01925 0.69 -1.1 407,560 + AO353_01925 0.69 +0.5 407,560 + AO353_01925 0.69 -0.9 407,560 + AO353_01925 0.69 -0.4 407,560 + AO353_01925 0.69 +0.3 407,560 + AO353_01925 0.69 -0.0 407,560 + AO353_01925 0.69 +0.8 407,560 + AO353_01925 0.69 -0.2 407,561 - AO353_01925 0.69 -1.9 407,561 - AO353_01925 0.69 -0.2 407,561 - AO353_01925 0.69 -0.6 407,561 - AO353_01925 0.69 +2.6 407,561 - AO353_01925 0.69 -0.7 407,561 - AO353_01925 0.69 -0.9 407,561 - AO353_01925 0.69 -0.1 407,561 - AO353_01925 0.69 +1.1 407,561 - AO353_01925 0.69 -0.0 407,561 - AO353_01925 0.69 -0.1 407,561 - AO353_01925 0.69 +1.7 407,683 + AO353_01925 0.84 -1.2 407,743 + +0.3 407,743 + -0.5 407,743 + +0.8 407,743 + -0.5 407,744 - +1.3 407,744 - -1.1 407,744 - -0.2 407,744 - +1.5 407,744 - -0.7 407,744 - +0.5 407,744 - +0.4 407,744 - -1.2 407,744 - +0.2 407,863 + -0.2 407,864 - -0.1 407,864 - -0.8 407,864 - -1.4 407,869 + +0.1 407,869 + -0.3 407,869 + -0.9 407,869 + -0.9 407,869 + +0.3 407,869 + -1.2 407,869 + -1.5 407,870 - -0.1
Or see this region's nucleotide sequence