Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29270

Experiment: Glucuronamide (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS29265 and ABID97_RS29270 are separated by 287 nucleotidesABID97_RS29270 and ABID97_RS29275 are separated by 35 nucleotides ABID97_RS29265: ABID97_RS29265 - alkaline phosphatase D family protein, at 775,613 to 777,421 _RS29265 ABID97_RS29270: ABID97_RS29270 - cytochrome b561 domain-containing protein, at 777,709 to 778,485 _RS29270 ABID97_RS29275: ABID97_RS29275 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 778,521 to 779,612 _RS29275 Position (kb) 777 778 779Strain fitness (log2 ratio) -1 0 1at 776.724 kb on - strand, within ABID97_RS29265at 776.987 kb on + strand, within ABID97_RS29265at 776.987 kb on + strand, within ABID97_RS29265at 776.988 kb on - strand, within ABID97_RS29265at 776.988 kb on - strand, within ABID97_RS29265at 777.317 kb on + strandat 777.663 kb on + strandat 778.370 kb on - strand, within ABID97_RS29270at 778.770 kb on + strand, within ABID97_RS29275at 778.771 kb on - strand, within ABID97_RS29275at 778.771 kb on - strand, within ABID97_RS29275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
remove
776,724 - ABID97_RS29265 0.61 -0.8
776,987 + ABID97_RS29265 0.76 -1.7
776,987 + ABID97_RS29265 0.76 +0.1
776,988 - ABID97_RS29265 0.76 -0.2
776,988 - ABID97_RS29265 0.76 -0.3
777,317 + +0.9
777,663 + -0.1
778,370 - ABID97_RS29270 0.85 -1.5
778,770 + ABID97_RS29275 0.23 -0.7
778,771 - ABID97_RS29275 0.23 +0.3
778,771 - ABID97_RS29275 0.23 +0.1

Or see this region's nucleotide sequence