Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26050

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26045 and ABID97_RS26050 are separated by 188 nucleotidesABID97_RS26050 and ABID97_RS26055 are separated by 205 nucleotides ABID97_RS26045: ABID97_RS26045 - CoA ester lyase, at 134,020 to 134,862 _RS26045 ABID97_RS26050: ABID97_RS26050 - IclR family transcriptional regulator, at 135,051 to 135,830 _RS26050 ABID97_RS26055: ABID97_RS26055 - TRAP transporter substrate-binding protein, at 136,036 to 137,058 _RS26055 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1at 134.795 kb on + strandat 135.293 kb on - strand, within ABID97_RS26050at 135.463 kb on + strand, within ABID97_RS26050at 135.682 kb on + strand, within ABID97_RS26050

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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134,795 + -0.9
135,293 - ABID97_RS26050 0.31 -0.5
135,463 + ABID97_RS26050 0.53 -1.8
135,682 + ABID97_RS26050 0.81 -0.8

Or see this region's nucleotide sequence