Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23215 and ABID97_RS23220 are separated by 65 nucleotides ABID97_RS23220 and ABID97_RS23225 are separated by 34 nucleotides
ABID97_RS23215: ABID97_RS23215 - ABC transporter ATP-binding protein, at 4,796,878 to 4,797,732
_RS23215
ABID97_RS23220: ABID97_RS23220 - glutamate synthase subunit beta, at 4,797,798 to 4,799,276
_RS23220
ABID97_RS23225: ABID97_RS23225 - glutamate synthase-related protein, at 4,799,311 to 4,804,074
_RS23225
Position (kb) 4797
4798
4799
4800 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4796.927 kb on + strand at 4797.133 kb on + strand, within ABID97_RS23215 at 4797.133 kb on + strand, within ABID97_RS23215 at 4797.133 kb on + strand, within ABID97_RS23215 at 4797.191 kb on + strand, within ABID97_RS23215 at 4797.191 kb on + strand, within ABID97_RS23215 at 4797.191 kb on + strand, within ABID97_RS23215 at 4797.191 kb on + strand, within ABID97_RS23215 at 4797.192 kb on - strand, within ABID97_RS23215 at 4797.192 kb on - strand, within ABID97_RS23215 at 4797.192 kb on - strand, within ABID97_RS23215 at 4797.192 kb on - strand, within ABID97_RS23215 at 4797.192 kb on - strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.452 kb on + strand, within ABID97_RS23215 at 4797.453 kb on - strand, within ABID97_RS23215 at 4797.453 kb on - strand, within ABID97_RS23215 at 4797.453 kb on - strand, within ABID97_RS23215 at 4797.668 kb on - strand at 4797.807 kb on + strand at 4798.544 kb on - strand, within ABID97_RS23220 at 4799.063 kb on - strand, within ABID97_RS23220 at 4799.197 kb on + strand at 4799.198 kb on - strand at 4799.198 kb on - strand at 4799.227 kb on + strand at 4799.228 kb on - strand at 4799.228 kb on - strand at 4799.435 kb on + strand at 4799.435 kb on + strand at 4799.435 kb on + strand at 4799.435 kb on + strand at 4799.684 kb on + strand at 4799.768 kb on + strand at 4799.768 kb on + strand at 4799.769 kb on - strand at 4799.769 kb on - strand at 4799.769 kb on - strand at 4799.859 kb on - strand, within ABID97_RS23225 at 4799.859 kb on - strand, within ABID97_RS23225 at 4800.009 kb on - strand, within ABID97_RS23225 at 4800.273 kb on - strand, within ABID97_RS23225
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 4,796,927 + +0.0 4,797,133 + ABID97_RS23215 0.30 -0.2 4,797,133 + ABID97_RS23215 0.30 +1.4 4,797,133 + ABID97_RS23215 0.30 -0.1 4,797,191 + ABID97_RS23215 0.37 -0.0 4,797,191 + ABID97_RS23215 0.37 -0.5 4,797,191 + ABID97_RS23215 0.37 +0.1 4,797,191 + ABID97_RS23215 0.37 +0.2 4,797,192 - ABID97_RS23215 0.37 +1.4 4,797,192 - ABID97_RS23215 0.37 +0.2 4,797,192 - ABID97_RS23215 0.37 +0.4 4,797,192 - ABID97_RS23215 0.37 -0.5 4,797,192 - ABID97_RS23215 0.37 -0.8 4,797,452 + ABID97_RS23215 0.67 +0.2 4,797,452 + ABID97_RS23215 0.67 +0.8 4,797,452 + ABID97_RS23215 0.67 -0.1 4,797,452 + ABID97_RS23215 0.67 -0.1 4,797,452 + ABID97_RS23215 0.67 +0.1 4,797,452 + ABID97_RS23215 0.67 +0.4 4,797,452 + ABID97_RS23215 0.67 +0.0 4,797,453 - ABID97_RS23215 0.67 -0.4 4,797,453 - ABID97_RS23215 0.67 -0.4 4,797,453 - ABID97_RS23215 0.67 -0.9 4,797,668 - -0.5 4,797,807 + -0.6 4,798,544 - ABID97_RS23220 0.50 -1.1 4,799,063 - ABID97_RS23220 0.86 -0.7 4,799,197 + -0.4 4,799,198 - -2.8 4,799,198 - -1.0 4,799,227 + -1.3 4,799,228 - -1.7 4,799,228 - -4.2 4,799,435 + -1.2 4,799,435 + -0.4 4,799,435 + -2.2 4,799,435 + +1.6 4,799,684 + -1.7 4,799,768 + -1.6 4,799,768 + -3.0 4,799,769 - -1.4 4,799,769 - -3.5 4,799,769 - -4.2 4,799,859 - ABID97_RS23225 0.12 -1.5 4,799,859 - ABID97_RS23225 0.12 -0.9 4,800,009 - ABID97_RS23225 0.15 -2.0 4,800,273 - ABID97_RS23225 0.20 -0.1
Or see this region's nucleotide sequence