Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16205 and ABID97_RS16210 are separated by 18 nucleotides ABID97_RS16210 and ABID97_RS16215 are separated by 17 nucleotides ABID97_RS16215 and ABID97_RS16220 are separated by 13 nucleotides ABID97_RS16220 and ABID97_RS16225 are separated by 10 nucleotides
ABID97_RS16205: ABID97_RS16205 - cytochrome c oxidase accessory protein CcoG, at 3,354,672 to 3,356,132
_RS16205
ABID97_RS16210: ABID97_RS16210 - cytochrome-c oxidase, cbb3-type subunit III, at 3,356,151 to 3,357,062
_RS16210
ABID97_RS16215: ABID97_RS16215 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 3,357,080 to 3,357,220
_RS16215
ABID97_RS16220: ABID97_RS16220 - cytochrome-c oxidase, cbb3-type subunit II, at 3,357,234 to 3,357,866
_RS16220
ABID97_RS16225: ABID97_RS16225 - cytochrome-c oxidase, cbb3-type subunit I, at 3,357,877 to 3,359,316
_RS16225
Position (kb)
3356
3357
3358 Strain fitness (log2 ratio)
-2
-1
0
1 at 3355.430 kb on - strand, within ABID97_RS16205 at 3355.430 kb on - strand, within ABID97_RS16205 at 3355.564 kb on + strand, within ABID97_RS16205 at 3355.565 kb on - strand, within ABID97_RS16205 at 3355.729 kb on + strand, within ABID97_RS16205 at 3355.729 kb on + strand, within ABID97_RS16205 at 3355.829 kb on - strand, within ABID97_RS16205 at 3356.008 kb on + strand at 3356.009 kb on - strand at 3356.188 kb on + strand at 3356.293 kb on + strand, within ABID97_RS16210 at 3356.449 kb on + strand, within ABID97_RS16210 at 3357.029 kb on - strand at 3357.418 kb on + strand, within ABID97_RS16220 at 3357.490 kb on + strand, within ABID97_RS16220 at 3357.640 kb on + strand, within ABID97_RS16220 at 3357.980 kb on + strand at 3358.049 kb on + strand, within ABID97_RS16225
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 3,355,430 - ABID97_RS16205 0.52 -0.2 3,355,430 - ABID97_RS16205 0.52 -0.8 3,355,564 + ABID97_RS16205 0.61 +1.5 3,355,565 - ABID97_RS16205 0.61 +0.3 3,355,729 + ABID97_RS16205 0.72 +0.2 3,355,729 + ABID97_RS16205 0.72 +0.1 3,355,829 - ABID97_RS16205 0.79 -0.5 3,356,008 + +0.4 3,356,009 - +0.3 3,356,188 + +0.0 3,356,293 + ABID97_RS16210 0.16 -2.0 3,356,449 + ABID97_RS16210 0.33 -0.3 3,357,029 - -0.6 3,357,418 + ABID97_RS16220 0.29 +1.2 3,357,490 + ABID97_RS16220 0.40 -0.6 3,357,640 + ABID97_RS16220 0.64 -0.2 3,357,980 + -0.6 3,358,049 + ABID97_RS16225 0.12 +0.2
Or see this region's nucleotide sequence