Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16210

Experiment: Glucuronamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16205 and ABID97_RS16210 are separated by 18 nucleotidesABID97_RS16210 and ABID97_RS16215 are separated by 17 nucleotidesABID97_RS16215 and ABID97_RS16220 are separated by 13 nucleotidesABID97_RS16220 and ABID97_RS16225 are separated by 10 nucleotides ABID97_RS16205: ABID97_RS16205 - cytochrome c oxidase accessory protein CcoG, at 3,354,672 to 3,356,132 _RS16205 ABID97_RS16210: ABID97_RS16210 - cytochrome-c oxidase, cbb3-type subunit III, at 3,356,151 to 3,357,062 _RS16210 ABID97_RS16215: ABID97_RS16215 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 3,357,080 to 3,357,220 _RS16215 ABID97_RS16220: ABID97_RS16220 - cytochrome-c oxidase, cbb3-type subunit II, at 3,357,234 to 3,357,866 _RS16220 ABID97_RS16225: ABID97_RS16225 - cytochrome-c oxidase, cbb3-type subunit I, at 3,357,877 to 3,359,316 _RS16225 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -2 -1 0 1at 3355.430 kb on - strand, within ABID97_RS16205at 3355.430 kb on - strand, within ABID97_RS16205at 3355.564 kb on + strand, within ABID97_RS16205at 3355.565 kb on - strand, within ABID97_RS16205at 3355.729 kb on + strand, within ABID97_RS16205at 3355.729 kb on + strand, within ABID97_RS16205at 3355.829 kb on - strand, within ABID97_RS16205at 3356.008 kb on + strandat 3356.009 kb on - strandat 3356.188 kb on + strandat 3356.293 kb on + strand, within ABID97_RS16210at 3356.449 kb on + strand, within ABID97_RS16210at 3357.029 kb on - strandat 3357.418 kb on + strand, within ABID97_RS16220at 3357.490 kb on + strand, within ABID97_RS16220at 3357.640 kb on + strand, within ABID97_RS16220at 3357.980 kb on + strandat 3358.049 kb on + strand, within ABID97_RS16225

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucuronamide (C)
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3,355,430 - ABID97_RS16205 0.52 -0.2
3,355,430 - ABID97_RS16205 0.52 -0.8
3,355,564 + ABID97_RS16205 0.61 +1.5
3,355,565 - ABID97_RS16205 0.61 +0.3
3,355,729 + ABID97_RS16205 0.72 +0.2
3,355,729 + ABID97_RS16205 0.72 +0.1
3,355,829 - ABID97_RS16205 0.79 -0.5
3,356,008 + +0.4
3,356,009 - +0.3
3,356,188 + +0.0
3,356,293 + ABID97_RS16210 0.16 -2.0
3,356,449 + ABID97_RS16210 0.33 -0.3
3,357,029 - -0.6
3,357,418 + ABID97_RS16220 0.29 +1.2
3,357,490 + ABID97_RS16220 0.40 -0.6
3,357,640 + ABID97_RS16220 0.64 -0.2
3,357,980 + -0.6
3,358,049 + ABID97_RS16225 0.12 +0.2

Or see this region's nucleotide sequence