Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06730 and ABID97_RS06735 are separated by 16 nucleotides ABID97_RS06735 and ABID97_RS06740 are separated by 8 nucleotides ABID97_RS06740 and ABID97_RS06745 are separated by 287 nucleotides
ABID97_RS06730: ABID97_RS06730 - zinc-dependent alcohol dehydrogenase, at 1,418,785 to 1,419,966
_RS06730
ABID97_RS06735: ABID97_RS06735 - hypothetical protein, at 1,419,983 to 1,420,504
_RS06735
ABID97_RS06740: ABID97_RS06740 - hypothetical protein, at 1,420,513 to 1,421,070
_RS06740
ABID97_RS06745: ABID97_RS06745 - ATP-dependent DNA helicase RecQ, at 1,421,358 to 1,423,121
_RS06745
Position (kb) 1420
1421
1422 Strain fitness (log2 ratio) -1
0
1 at 1420.365 kb on - strand, within ABID97_RS06735 at 1420.892 kb on + strand, within ABID97_RS06740 at 1420.892 kb on + strand, within ABID97_RS06740 at 1420.892 kb on + strand, within ABID97_RS06740 at 1420.893 kb on - strand, within ABID97_RS06740 at 1420.893 kb on - strand, within ABID97_RS06740 at 1421.363 kb on + strand at 1421.364 kb on - strand at 1421.544 kb on + strand, within ABID97_RS06745 at 1422.019 kb on - strand, within ABID97_RS06745
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 1,420,365 - ABID97_RS06735 0.73 +0.8 1,420,892 + ABID97_RS06740 0.68 +0.1 1,420,892 + ABID97_RS06740 0.68 +0.0 1,420,892 + ABID97_RS06740 0.68 -0.4 1,420,893 - ABID97_RS06740 0.68 -1.5 1,420,893 - ABID97_RS06740 0.68 +0.8 1,421,363 + -0.4 1,421,364 - +0.0 1,421,544 + ABID97_RS06745 0.11 +0.2 1,422,019 - ABID97_RS06745 0.37 -0.0
Or see this region's nucleotide sequence