Experiment: Glucuronamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02940 and ABID97_RS02945 are separated by 206 nucleotides ABID97_RS02945 and ABID97_RS02950 overlap by 4 nucleotides ABID97_RS02950 and ABID97_RS02955 are separated by 6 nucleotides
ABID97_RS02940: ABID97_RS02940 - FAD-linked oxidase C-terminal domain-containing protein, at 599,223 to 600,647
_RS02940
ABID97_RS02945: ABID97_RS02945 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 600,854 to 601,465
_RS02945
ABID97_RS02950: ABID97_RS02950 - hypothetical protein, at 601,462 to 601,824
_RS02950
ABID97_RS02955: ABID97_RS02955 - GDSL-type esterase/lipase family protein, at 601,831 to 602,469
_RS02955
Position (kb) 600
601
602 Strain fitness (log2 ratio) -1
0
1
2
3 at 599.965 kb on + strand, within ABID97_RS02940 at 599.965 kb on + strand, within ABID97_RS02940 at 599.965 kb on + strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 599.966 kb on - strand, within ABID97_RS02940 at 600.715 kb on + strand at 600.715 kb on + strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.716 kb on - strand at 600.744 kb on - strand at 600.792 kb on + strand at 600.792 kb on + strand at 600.819 kb on + strand at 600.820 kb on - strand at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.304 kb on + strand, within ABID97_RS02945 at 601.305 kb on - strand, within ABID97_RS02945 at 601.305 kb on - strand, within ABID97_RS02945 at 601.380 kb on - strand, within ABID97_RS02945 at 601.887 kb on - strand at 601.949 kb on + strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 601.950 kb on - strand, within ABID97_RS02955 at 602.186 kb on + strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955 at 602.187 kb on - strand, within ABID97_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction Glucuronamide (C) remove 599,965 + ABID97_RS02940 0.52 -0.7 599,965 + ABID97_RS02940 0.52 +0.0 599,965 + ABID97_RS02940 0.52 -0.4 599,966 - ABID97_RS02940 0.52 -0.1 599,966 - ABID97_RS02940 0.52 -0.2 599,966 - ABID97_RS02940 0.52 +3.4 599,966 - ABID97_RS02940 0.52 -0.3 599,966 - ABID97_RS02940 0.52 +0.4 600,715 + -0.7 600,715 + -0.9 600,716 - -0.5 600,716 - +0.3 600,716 - +0.7 600,716 - -0.4 600,744 - +1.7 600,792 + +0.3 600,792 + -0.2 600,819 + -0.3 600,820 - -1.2 601,304 + ABID97_RS02945 0.74 +0.7 601,304 + ABID97_RS02945 0.74 -0.9 601,304 + ABID97_RS02945 0.74 -0.8 601,304 + ABID97_RS02945 0.74 -1.0 601,305 - ABID97_RS02945 0.74 -1.4 601,305 - ABID97_RS02945 0.74 -0.4 601,380 - ABID97_RS02945 0.86 -1.6 601,887 - -0.5 601,949 + ABID97_RS02955 0.18 +0.0 601,950 - ABID97_RS02955 0.19 -1.3 601,950 - ABID97_RS02955 0.19 -0.4 601,950 - ABID97_RS02955 0.19 +0.0 601,950 - ABID97_RS02955 0.19 -0.3 601,950 - ABID97_RS02955 0.19 -0.4 601,950 - ABID97_RS02955 0.19 -0.5 601,950 - ABID97_RS02955 0.19 -1.7 602,186 + ABID97_RS02955 0.56 -0.0 602,187 - ABID97_RS02955 0.56 +0.5 602,187 - ABID97_RS02955 0.56 -0.0 602,187 - ABID97_RS02955 0.56 +0.6 602,187 - ABID97_RS02955 0.56 +0.3 602,187 - ABID97_RS02955 0.56 -1.2 602,187 - ABID97_RS02955 0.56 -0.8
Or see this region's nucleotide sequence