Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3986

Experiment: Aluminum chloride 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3985 and Pf6N2E2_3986 are separated by 685 nucleotidesPf6N2E2_3986 and Pf6N2E2_3987 overlap by 4 nucleotidesPf6N2E2_3987 and Pf6N2E2_3988 are separated by 10 nucleotides Pf6N2E2_3985 - Predicted regulator PutR for proline utilization, GntR family, at 4,651,298 to 4,651,990 _3985 Pf6N2E2_3986 - PROBABLE REMNANT OF A TRANSPOSASE GENE PROTEIN, at 4,652,676 to 4,653,452 _3986 Pf6N2E2_3987 - FIG00953743: hypothetical protein, at 4,653,449 to 4,654,381 _3987 Pf6N2E2_3988 - Non-ribosomal peptide synthetase modules and related proteins, at 4,654,392 to 4,657,811 _3988 Position (kb) 4652 4653 4654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4651.917 kb on + strand, within Pf6N2E2_3985at 4652.027 kb on + strandat 4652.028 kb on - strandat 4652.028 kb on - strandat 4652.031 kb on + strandat 4652.031 kb on + strandat 4652.032 kb on - strandat 4652.204 kb on - strandat 4652.204 kb on - strandat 4652.268 kb on + strandat 4652.269 kb on - strandat 4652.279 kb on - strandat 4652.472 kb on + strandat 4652.698 kb on + strandat 4652.699 kb on - strandat 4652.908 kb on + strand, within Pf6N2E2_3986at 4652.968 kb on - strand, within Pf6N2E2_3986at 4653.250 kb on - strand, within Pf6N2E2_3986at 4653.252 kb on + strand, within Pf6N2E2_3986at 4653.252 kb on + strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.253 kb on - strand, within Pf6N2E2_3986at 4653.355 kb on + strand, within Pf6N2E2_3986at 4653.355 kb on + strand, within Pf6N2E2_3986at 4653.465 kb on - strandat 4653.465 kb on - strandat 4653.641 kb on + strand, within Pf6N2E2_3987at 4653.641 kb on + strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.642 kb on - strand, within Pf6N2E2_3987at 4653.782 kb on + strand, within Pf6N2E2_3987at 4653.783 kb on - strand, within Pf6N2E2_3987at 4653.783 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.089 kb on - strand, within Pf6N2E2_3987at 4654.157 kb on + strand, within Pf6N2E2_3987at 4654.347 kb on + strandat 4654.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 4 mM
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4,651,917 + Pf6N2E2_3985 0.89 -3.7
4,652,027 + -0.7
4,652,028 - -0.2
4,652,028 - -2.1
4,652,031 + -3.3
4,652,031 + +0.4
4,652,032 - +0.5
4,652,204 - +1.0
4,652,204 - +0.5
4,652,268 + -2.6
4,652,269 - -4.1
4,652,279 - +1.3
4,652,472 + -1.3
4,652,698 + -2.0
4,652,699 - -0.0
4,652,908 + Pf6N2E2_3986 0.30 +1.6
4,652,968 - Pf6N2E2_3986 0.38 +1.1
4,653,250 - Pf6N2E2_3986 0.74 +0.3
4,653,252 + Pf6N2E2_3986 0.74 -0.0
4,653,252 + Pf6N2E2_3986 0.74 +0.2
4,653,253 - Pf6N2E2_3986 0.74 +1.2
4,653,253 - Pf6N2E2_3986 0.74 +0.6
4,653,253 - Pf6N2E2_3986 0.74 +0.9
4,653,253 - Pf6N2E2_3986 0.74 -0.4
4,653,253 - Pf6N2E2_3986 0.74 +0.5
4,653,253 - Pf6N2E2_3986 0.74 +1.7
4,653,355 + Pf6N2E2_3986 0.87 +0.0
4,653,355 + Pf6N2E2_3986 0.87 +1.1
4,653,465 - -0.7
4,653,465 - -0.5
4,653,641 + Pf6N2E2_3987 0.21 +0.6
4,653,641 + Pf6N2E2_3987 0.21 -2.1
4,653,642 - Pf6N2E2_3987 0.21 +0.5
4,653,642 - Pf6N2E2_3987 0.21 +0.0
4,653,642 - Pf6N2E2_3987 0.21 -3.1
4,653,642 - Pf6N2E2_3987 0.21 +1.7
4,653,642 - Pf6N2E2_3987 0.21 +1.2
4,653,782 + Pf6N2E2_3987 0.36 +1.1
4,653,783 - Pf6N2E2_3987 0.36 +1.3
4,653,783 - Pf6N2E2_3987 0.36 +1.2
4,654,089 - Pf6N2E2_3987 0.69 -2.1
4,654,089 - Pf6N2E2_3987 0.69 +0.2
4,654,089 - Pf6N2E2_3987 0.69 -0.7
4,654,157 + Pf6N2E2_3987 0.76 +0.2
4,654,347 + -0.3
4,654,368 - +0.5

Or see this region's nucleotide sequence