Experiment: Beta-alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19645 and ABZR87_RS19650 are separated by 47 nucleotides ABZR87_RS19650 and ABZR87_RS19655 are separated by 194 nucleotides ABZR87_RS19655 and ABZR87_RS19660 are separated by 155 nucleotides
ABZR87_RS19645: ABZR87_RS19645 - 3-hydroxybutyrate dehydrogenase, at 781,989 to 782,774
_RS19645
ABZR87_RS19650: ABZR87_RS19650 - acetoacetate decarboxylase, at 782,822 to 783,565
_RS19650
ABZR87_RS19655: ABZR87_RS19655 - PLP-dependent aminotransferase family protein, at 783,760 to 785,163
_RS19655
ABZR87_RS19660: ABZR87_RS19660 - aspartate aminotransferase family protein, at 785,319 to 786,656
_RS19660
Position (kb) 783
784
785
786 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 782.781 kb on - strand at 782.823 kb on + strand at 782.835 kb on + strand at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.000 kb on + strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.001 kb on - strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.123 kb on + strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.124 kb on - strand, within ABZR87_RS19650 at 783.273 kb on + strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.274 kb on - strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.288 kb on + strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.289 kb on - strand, within ABZR87_RS19650 at 783.309 kb on + strand, within ABZR87_RS19650 at 783.309 kb on + strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.310 kb on - strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.342 kb on + strand, within ABZR87_RS19650 at 783.343 kb on - strand, within ABZR87_RS19650 at 783.343 kb on - strand, within ABZR87_RS19650 at 783.629 kb on + strand at 783.728 kb on + strand at 783.728 kb on + strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.729 kb on - strand at 783.803 kb on + strand at 783.804 kb on - strand at 783.854 kb on + strand at 783.854 kb on + strand at 783.854 kb on + strand at 783.854 kb on + strand at 783.855 kb on - strand at 783.901 kb on + strand, within ABZR87_RS19655 at 783.964 kb on - strand, within ABZR87_RS19655 at 784.098 kb on + strand, within ABZR87_RS19655 at 784.099 kb on - strand, within ABZR87_RS19655 at 784.175 kb on + strand, within ABZR87_RS19655 at 784.175 kb on + strand, within ABZR87_RS19655 at 784.175 kb on + strand, within ABZR87_RS19655 at 784.175 kb on + strand, within ABZR87_RS19655 at 784.176 kb on - strand, within ABZR87_RS19655 at 784.223 kb on + strand, within ABZR87_RS19655 at 784.223 kb on + strand, within ABZR87_RS19655 at 784.223 kb on + strand, within ABZR87_RS19655 at 784.224 kb on - strand, within ABZR87_RS19655 at 784.224 kb on - strand, within ABZR87_RS19655 at 784.224 kb on - strand, within ABZR87_RS19655 at 784.224 kb on - strand, within ABZR87_RS19655 at 784.224 kb on - strand, within ABZR87_RS19655 at 784.346 kb on + strand, within ABZR87_RS19655 at 784.682 kb on + strand, within ABZR87_RS19655 at 784.683 kb on - strand, within ABZR87_RS19655 at 784.924 kb on - strand, within ABZR87_RS19655 at 784.991 kb on + strand, within ABZR87_RS19655 at 784.991 kb on + strand, within ABZR87_RS19655 at 784.992 kb on - strand, within ABZR87_RS19655 at 784.992 kb on - strand, within ABZR87_RS19655 at 785.008 kb on - strand, within ABZR87_RS19655 at 785.008 kb on - strand, within ABZR87_RS19655 at 785.008 kb on - strand, within ABZR87_RS19655 at 785.127 kb on + strand at 785.127 kb on + strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.128 kb on - strand at 785.201 kb on - strand at 785.213 kb on - strand at 785.361 kb on + strand at 785.361 kb on + strand at 785.361 kb on + strand at 785.361 kb on + strand at 785.362 kb on - strand at 785.394 kb on + strand at 785.394 kb on + strand at 785.394 kb on + strand at 785.394 kb on + strand at 785.394 kb on + strand at 785.395 kb on - strand at 785.395 kb on - strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.436 kb on + strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.437 kb on - strand at 785.439 kb on + strand at 785.439 kb on + strand at 785.559 kb on + strand, within ABZR87_RS19660 at 785.559 kb on + strand, within ABZR87_RS19660 at 785.560 kb on - strand, within ABZR87_RS19660 at 785.560 kb on - strand, within ABZR87_RS19660 at 785.707 kb on - strand, within ABZR87_RS19660 at 785.707 kb on - strand, within ABZR87_RS19660 at 785.763 kb on + strand, within ABZR87_RS19660 at 785.864 kb on + strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 786.034 kb on - strand, within ABZR87_RS19660 at 786.086 kb on - strand, within ABZR87_RS19660
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-alanine (C) remove 782,781 - -0.1 782,823 + +0.6 782,835 + -0.8 783,000 + ABZR87_RS19650 0.24 -1.1 783,000 + ABZR87_RS19650 0.24 +0.4 783,000 + ABZR87_RS19650 0.24 +0.2 783,000 + ABZR87_RS19650 0.24 +0.3 783,000 + ABZR87_RS19650 0.24 +1.0 783,000 + ABZR87_RS19650 0.24 +0.7 783,000 + ABZR87_RS19650 0.24 +0.7 783,000 + ABZR87_RS19650 0.24 -0.1 783,001 - ABZR87_RS19650 0.24 +0.1 783,001 - ABZR87_RS19650 0.24 +0.1 783,001 - ABZR87_RS19650 0.24 -0.1 783,123 + ABZR87_RS19650 0.40 -0.3 783,123 + ABZR87_RS19650 0.40 +1.8 783,123 + ABZR87_RS19650 0.40 +0.6 783,124 - ABZR87_RS19650 0.41 +0.0 783,124 - ABZR87_RS19650 0.41 +0.6 783,124 - ABZR87_RS19650 0.41 -0.2 783,273 + ABZR87_RS19650 0.61 -0.2 783,274 - ABZR87_RS19650 0.61 +0.4 783,274 - ABZR87_RS19650 0.61 +0.3 783,274 - ABZR87_RS19650 0.61 -0.2 783,288 + ABZR87_RS19650 0.63 +0.7 783,288 + ABZR87_RS19650 0.63 +0.2 783,288 + ABZR87_RS19650 0.63 -0.2 783,289 - ABZR87_RS19650 0.63 -0.1 783,289 - ABZR87_RS19650 0.63 -1.4 783,289 - ABZR87_RS19650 0.63 +0.6 783,309 + ABZR87_RS19650 0.65 -0.5 783,309 + ABZR87_RS19650 0.65 -0.3 783,310 - ABZR87_RS19650 0.66 -0.1 783,310 - ABZR87_RS19650 0.66 -0.8 783,310 - ABZR87_RS19650 0.66 +0.9 783,310 - ABZR87_RS19650 0.66 +0.2 783,310 - ABZR87_RS19650 0.66 +1.1 783,310 - ABZR87_RS19650 0.66 +0.7 783,342 + ABZR87_RS19650 0.70 +0.8 783,342 + ABZR87_RS19650 0.70 -0.2 783,342 + ABZR87_RS19650 0.70 +0.3 783,343 - ABZR87_RS19650 0.70 -0.0 783,343 - ABZR87_RS19650 0.70 -0.2 783,629 + -0.1 783,728 + +0.6 783,728 + +0.4 783,729 - -0.3 783,729 - -0.5 783,729 - +0.2 783,729 - +0.3 783,729 - +0.8 783,729 - -0.8 783,803 + -5.0 783,804 - -1.2 783,854 + -1.2 783,854 + -1.2 783,854 + -0.7 783,854 + -1.0 783,855 - -1.7 783,901 + ABZR87_RS19655 0.10 -0.7 783,964 - ABZR87_RS19655 0.15 -4.2 784,098 + ABZR87_RS19655 0.24 -1.6 784,099 - ABZR87_RS19655 0.24 -2.9 784,175 + ABZR87_RS19655 0.30 -3.5 784,175 + ABZR87_RS19655 0.30 -3.3 784,175 + ABZR87_RS19655 0.30 -3.9 784,175 + ABZR87_RS19655 0.30 -1.0 784,176 - ABZR87_RS19655 0.30 -3.5 784,223 + ABZR87_RS19655 0.33 -1.4 784,223 + ABZR87_RS19655 0.33 -2.7 784,223 + ABZR87_RS19655 0.33 -3.2 784,224 - ABZR87_RS19655 0.33 -2.6 784,224 - ABZR87_RS19655 0.33 -0.4 784,224 - ABZR87_RS19655 0.33 -2.6 784,224 - ABZR87_RS19655 0.33 -3.1 784,224 - ABZR87_RS19655 0.33 -3.2 784,346 + ABZR87_RS19655 0.42 -3.1 784,682 + ABZR87_RS19655 0.66 -3.2 784,683 - ABZR87_RS19655 0.66 -3.5 784,924 - ABZR87_RS19655 0.83 -3.7 784,991 + ABZR87_RS19655 0.88 -3.9 784,991 + ABZR87_RS19655 0.88 -1.9 784,992 - ABZR87_RS19655 0.88 -4.1 784,992 - ABZR87_RS19655 0.88 -0.2 785,008 - ABZR87_RS19655 0.89 -4.6 785,008 - ABZR87_RS19655 0.89 -2.1 785,008 - ABZR87_RS19655 0.89 -2.7 785,127 + -2.7 785,127 + -1.5 785,128 - -3.0 785,128 - -4.2 785,128 - -2.9 785,128 - -3.1 785,128 - -3.9 785,128 - -3.7 785,201 - -3.0 785,213 - -1.3 785,361 + -3.3 785,361 + -3.3 785,361 + -2.2 785,361 + -3.8 785,362 - -2.7 785,394 + -3.4 785,394 + -2.9 785,394 + -2.4 785,394 + -4.7 785,394 + -2.5 785,395 - +0.1 785,395 - -4.2 785,436 + -2.1 785,436 + -2.2 785,436 + -2.2 785,436 + -2.7 785,436 + +1.2 785,436 + -3.9 785,436 + -2.7 785,436 + -2.4 785,436 + -3.7 785,437 - -3.9 785,437 - -3.7 785,437 - -1.7 785,437 - +0.5 785,437 - -3.7 785,437 - -4.0 785,437 - -2.7 785,437 - +1.2 785,437 - -3.7 785,437 - -3.7 785,437 - -2.9 785,437 - -3.9 785,437 - -3.4 785,437 - -1.6 785,437 - -2.1 785,439 + -2.3 785,439 + -3.2 785,559 + ABZR87_RS19660 0.18 -2.9 785,559 + ABZR87_RS19660 0.18 -3.2 785,560 - ABZR87_RS19660 0.18 -0.7 785,560 - ABZR87_RS19660 0.18 -3.1 785,707 - ABZR87_RS19660 0.29 -2.2 785,707 - ABZR87_RS19660 0.29 -1.4 785,763 + ABZR87_RS19660 0.33 -2.2 785,864 + ABZR87_RS19660 0.41 -1.4 785,865 - ABZR87_RS19660 0.41 -4.5 785,865 - ABZR87_RS19660 0.41 +0.6 785,865 - ABZR87_RS19660 0.41 -3.7 786,034 - ABZR87_RS19660 0.53 -3.8 786,086 - ABZR87_RS19660 0.57 -3.7
Or see this region's nucleotide sequence