Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17005

Experiment: Beta-alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS16995 and ABZR87_RS17000 are separated by 74 nucleotidesABZR87_RS17000 and ABZR87_RS17005 are separated by 87 nucleotidesABZR87_RS17005 and ABZR87_RS17010 are separated by 90 nucleotidesABZR87_RS17010 and ABZR87_RS17015 are separated by 16 nucleotides ABZR87_RS16995: ABZR87_RS16995 - lysozyme inhibitor LprI family protein, at 165,377 to 165,832 _RS16995 ABZR87_RS17000: ABZR87_RS17000 - DJ-1/PfpI family protein, at 165,907 to 166,509 _RS17000 ABZR87_RS17005: ABZR87_RS17005 - PLP-dependent aminotransferase family protein, at 166,597 to 167,934 _RS17005 ABZR87_RS17010: ABZR87_RS17010 - cytochrome c, at 168,025 to 168,885 _RS17010 ABZR87_RS17015: ABZR87_RS17015 - DUF1697 domain-containing protein, at 168,902 to 169,411 _RS17015 Position (kb) 166 167 168Strain fitness (log2 ratio) -2 -1 0 1at 165.598 kb on + strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.853 kb on - strandat 165.853 kb on - strandat 165.883 kb on - strandat 165.949 kb on + strandat 165.949 kb on + strandat 165.950 kb on - strandat 165.954 kb on - strandat 165.954 kb on - strandat 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.984 kb on - strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.159 kb on - strand, within ABZR87_RS17000at 166.199 kb on - strand, within ABZR87_RS17000at 166.534 kb on + strandat 166.546 kb on + strandat 166.547 kb on - strandat 166.547 kb on - strandat 166.562 kb on + strandat 166.563 kb on - strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.582 kb on + strandat 166.585 kb on + strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.586 kb on - strandat 166.612 kb on + strandat 166.741 kb on + strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005at 166.742 kb on - strand, within ABZR87_RS17005at 166.848 kb on - strand, within ABZR87_RS17005at 166.879 kb on + strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.880 kb on - strand, within ABZR87_RS17005at 166.967 kb on - strand, within ABZR87_RS17005at 166.967 kb on - strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.054 kb on + strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.055 kb on - strand, within ABZR87_RS17005at 167.146 kb on + strand, within ABZR87_RS17005at 167.147 kb on - strand, within ABZR87_RS17005at 167.272 kb on + strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.273 kb on - strand, within ABZR87_RS17005at 167.386 kb on + strand, within ABZR87_RS17005at 167.387 kb on - strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.449 kb on + strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.450 kb on - strand, within ABZR87_RS17005at 167.478 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.716 kb on + strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.717 kb on - strand, within ABZR87_RS17005at 167.832 kb on - strandat 167.967 kb on - strandat 167.967 kb on - strandat 168.326 kb on - strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.511 kb on + strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.512 kb on - strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.700 kb on + strand, within ABZR87_RS17010at 168.701 kb on - strand, within ABZR87_RS17010at 168.715 kb on + strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.716 kb on - strand, within ABZR87_RS17010at 168.903 kb on + strandat 168.904 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-alanine (C)
remove
165,598 + ABZR87_RS16995 0.48 +0.6
165,599 - ABZR87_RS16995 0.49 +0.5
165,599 - ABZR87_RS16995 0.49 -0.2
165,599 - ABZR87_RS16995 0.49 +0.4
165,599 - ABZR87_RS16995 0.49 -0.3
165,690 + ABZR87_RS16995 0.69 -0.7
165,690 + ABZR87_RS16995 0.69 +0.6
165,690 + ABZR87_RS16995 0.69 +0.2
165,690 + ABZR87_RS16995 0.69 +0.0
165,691 - ABZR87_RS16995 0.69 +0.1
165,691 - ABZR87_RS16995 0.69 -1.7
165,853 - +0.6
165,853 - -0.6
165,883 - -0.6
165,949 + -0.1
165,949 + +0.0
165,950 - -0.2
165,954 - +0.0
165,954 - -0.2
165,983 + ABZR87_RS17000 0.13 +0.5
165,983 + ABZR87_RS17000 0.13 +0.1
165,983 + ABZR87_RS17000 0.13 +0.6
165,984 - ABZR87_RS17000 0.13 -0.2
166,094 + ABZR87_RS17000 0.31 +0.2
166,094 + ABZR87_RS17000 0.31 -0.6
166,094 + ABZR87_RS17000 0.31 +0.2
166,159 - ABZR87_RS17000 0.42 -2.1
166,199 - ABZR87_RS17000 0.48 +0.0
166,534 + +0.4
166,546 + +0.2
166,547 - +0.3
166,547 - -0.0
166,562 + +1.3
166,563 - -0.1
166,582 + -0.2
166,582 + -0.0
166,582 + +0.4
166,582 + -0.5
166,585 + -0.6
166,586 - +0.9
166,586 - -0.0
166,586 - +0.3
166,612 + +0.3
166,741 + ABZR87_RS17005 0.11 -0.4
166,742 - ABZR87_RS17005 0.11 -0.5
166,742 - ABZR87_RS17005 0.11 +1.2
166,848 - ABZR87_RS17005 0.19 -0.3
166,879 + ABZR87_RS17005 0.21 +0.0
166,880 - ABZR87_RS17005 0.21 +0.5
166,880 - ABZR87_RS17005 0.21 +0.3
166,880 - ABZR87_RS17005 0.21 -0.1
166,967 - ABZR87_RS17005 0.28 -0.0
166,967 - ABZR87_RS17005 0.28 -0.7
167,054 + ABZR87_RS17005 0.34 -0.2
167,054 + ABZR87_RS17005 0.34 -0.7
167,054 + ABZR87_RS17005 0.34 -0.5
167,054 + ABZR87_RS17005 0.34 -0.5
167,054 + ABZR87_RS17005 0.34 -0.1
167,054 + ABZR87_RS17005 0.34 +0.3
167,054 + ABZR87_RS17005 0.34 -0.5
167,054 + ABZR87_RS17005 0.34 +0.2
167,055 - ABZR87_RS17005 0.34 -0.7
167,055 - ABZR87_RS17005 0.34 +0.5
167,055 - ABZR87_RS17005 0.34 -0.4
167,146 + ABZR87_RS17005 0.41 +0.3
167,147 - ABZR87_RS17005 0.41 +0.9
167,272 + ABZR87_RS17005 0.50 +0.6
167,273 - ABZR87_RS17005 0.51 +0.3
167,273 - ABZR87_RS17005 0.51 +0.1
167,386 + ABZR87_RS17005 0.59 -0.8
167,387 - ABZR87_RS17005 0.59 +0.2
167,449 + ABZR87_RS17005 0.64 -0.2
167,449 + ABZR87_RS17005 0.64 -0.7
167,450 - ABZR87_RS17005 0.64 -0.7
167,450 - ABZR87_RS17005 0.64 -0.3
167,450 - ABZR87_RS17005 0.64 -0.1
167,478 + ABZR87_RS17005 0.66 +0.5
167,716 + ABZR87_RS17005 0.84 +0.2
167,716 + ABZR87_RS17005 0.84 +0.6
167,716 + ABZR87_RS17005 0.84 +0.4
167,717 - ABZR87_RS17005 0.84 -0.0
167,717 - ABZR87_RS17005 0.84 +0.4
167,717 - ABZR87_RS17005 0.84 +0.9
167,717 - ABZR87_RS17005 0.84 -0.4
167,832 - +0.4
167,967 - -0.7
167,967 - +0.3
168,326 - ABZR87_RS17010 0.35 -0.2
168,511 + ABZR87_RS17010 0.56 -0.1
168,511 + ABZR87_RS17010 0.56 -0.8
168,511 + ABZR87_RS17010 0.56 +0.7
168,511 + ABZR87_RS17010 0.56 -0.8
168,511 + ABZR87_RS17010 0.56 -0.3
168,511 + ABZR87_RS17010 0.56 +0.5
168,512 - ABZR87_RS17010 0.57 +0.9
168,512 - ABZR87_RS17010 0.57 +0.1
168,512 - ABZR87_RS17010 0.57 +0.2
168,512 - ABZR87_RS17010 0.57 +0.5
168,700 + ABZR87_RS17010 0.78 +0.5
168,700 + ABZR87_RS17010 0.78 +1.3
168,701 - ABZR87_RS17010 0.79 +0.4
168,715 + ABZR87_RS17010 0.80 +0.0
168,716 - ABZR87_RS17010 0.80 -0.1
168,716 - ABZR87_RS17010 0.80 -0.1
168,903 + +0.2
168,904 - -0.1

Or see this region's nucleotide sequence