Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_764 and Pf1N1B4_765 are separated by 116 nucleotides Pf1N1B4_765 and Pf1N1B4_766 are separated by 413 nucleotides
Pf1N1B4_764 - Uncharacterized isomerase yddE, PhzC-PhzF family, at 868,318 to 869,100
_764
Pf1N1B4_765 - Cys-tRNA(Pro) deacylase YbaK, at 869,217 to 869,687
_765
Pf1N1B4_766 - Glycerol uptake facilitator protein, at 870,101 to 870,910
_766
Position (kb) 869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 868.249 kb on - strand at 868.274 kb on + strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.275 kb on - strand at 868.330 kb on + strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.331 kb on - strand at 868.427 kb on + strand, within Pf1N1B4_764 at 868.428 kb on - strand, within Pf1N1B4_764 at 868.654 kb on + strand, within Pf1N1B4_764 at 868.655 kb on - strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.844 kb on + strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.845 kb on - strand, within Pf1N1B4_764 at 868.862 kb on + strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.863 kb on - strand, within Pf1N1B4_764 at 868.914 kb on + strand, within Pf1N1B4_764 at 869.092 kb on + strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.093 kb on - strand at 869.183 kb on + strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.184 kb on - strand at 869.355 kb on - strand, within Pf1N1B4_765 at 869.355 kb on - strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand, within Pf1N1B4_765 at 869.602 kb on + strand at 869.629 kb on + strand, within Pf1N1B4_765 at 869.629 kb on + strand, within Pf1N1B4_765 at 869.736 kb on - strand at 869.751 kb on - strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.763 kb on + strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.764 kb on - strand at 869.771 kb on + strand at 869.772 kb on - strand at 869.855 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 869.936 kb on + strand at 870.073 kb on - strand at 870.332 kb on + strand, within Pf1N1B4_766 at 870.332 kb on + strand at 870.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 868,249 - +1.0 868,274 + +1.3 868,275 - -2.6 868,275 - -3.5 868,275 - -0.8 868,330 + +1.0 868,331 - +0.0 868,331 - +1.0 868,331 - -2.3 868,331 - +0.5 868,427 + Pf1N1B4_764 0.14 -0.1 868,428 - Pf1N1B4_764 0.14 -2.5 868,654 + Pf1N1B4_764 0.43 +1.7 868,655 - Pf1N1B4_764 0.43 +0.2 868,844 + Pf1N1B4_764 0.67 -0.3 868,844 + Pf1N1B4_764 0.67 -3.3 868,845 - Pf1N1B4_764 0.67 -1.8 868,845 - Pf1N1B4_764 0.67 -0.1 868,845 - Pf1N1B4_764 0.67 +1.0 868,845 - Pf1N1B4_764 0.67 +1.7 868,845 - Pf1N1B4_764 0.67 +0.6 868,845 - Pf1N1B4_764 0.67 +0.8 868,862 + Pf1N1B4_764 0.69 -0.6 868,863 - Pf1N1B4_764 0.70 -1.4 868,863 - Pf1N1B4_764 0.70 +0.0 868,863 - Pf1N1B4_764 0.70 -0.6 868,914 + Pf1N1B4_764 0.76 -0.7 869,092 + +0.2 869,093 - +0.0 869,093 - +0.0 869,093 - +0.6 869,183 + -1.0 869,184 - +0.6 869,184 - -0.6 869,184 - -0.6 869,184 - +1.0 869,184 - -0.2 869,184 - +0.6 869,355 - Pf1N1B4_765 0.29 -1.0 869,355 - Pf1N1B4_765 0.29 +1.5 869,602 + Pf1N1B4_765 0.82 +1.0 869,602 + Pf1N1B4_765 0.82 +0.8 869,602 + Pf1N1B4_765 0.82 +0.4 869,602 + +0.4 869,629 + Pf1N1B4_765 0.87 +0.6 869,629 + Pf1N1B4_765 0.87 +0.3 869,736 - +0.0 869,751 - +1.0 869,763 + +0.0 869,763 + +1.0 869,763 + +0.0 869,763 + -2.0 869,763 + +0.0 869,764 - +0.0 869,764 - +2.6 869,764 - -1.0 869,764 - +0.0 869,764 - -1.3 869,764 - +0.1 869,764 - -1.3 869,771 + -0.4 869,772 - +1.4 869,855 + +0.4 869,936 + -2.3 869,936 + +0.0 869,936 + +1.7 870,073 - +0.0 870,332 + Pf1N1B4_766 0.29 -0.6 870,332 + +1.6 870,333 - -1.6
Or see this region's nucleotide sequence