Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5682

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5680 and Pf1N1B4_5681 are separated by 7 nucleotidesPf1N1B4_5681 and Pf1N1B4_5682 overlap by 1 nucleotidesPf1N1B4_5682 and Pf1N1B4_5683 are separated by 87 nucleotides Pf1N1B4_5680 - DNA polymerase-like protein PA0670, at 119,869 to 121,284 _5680 Pf1N1B4_5681 - RecA/RadA recombinase, at 121,292 to 121,909 _5681 Pf1N1B4_5682 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 121,909 to 122,526 _5682 Pf1N1B4_5683 - Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup, at 122,614 to 123,501 _5683 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.071 kb on - strand, within Pf1N1B4_5680at 121.986 kb on - strand, within Pf1N1B4_5682at 122.002 kb on + strandat 122.134 kb on - strand, within Pf1N1B4_5682at 122.174 kb on + strand, within Pf1N1B4_5682at 122.175 kb on - strand, within Pf1N1B4_5682at 122.175 kb on - strand, within Pf1N1B4_5682at 122.507 kb on - strandat 122.507 kb on - strandat 122.507 kb on - strandat 122.673 kb on - strandat 123.362 kb on - strand, within Pf1N1B4_5683at 123.444 kb on + strandat 123.444 kb on + strandat 123.445 kb on - strandat 123.445 kb on - strandat 123.445 kb on - strandat 123.445 kb on - strandat 123.494 kb on + strandat 123.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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121,071 - Pf1N1B4_5680 0.85 +0.3
121,986 - Pf1N1B4_5682 0.12 +1.7
122,002 + -1.9
122,134 - Pf1N1B4_5682 0.36 -2.0
122,174 + Pf1N1B4_5682 0.43 -0.6
122,175 - Pf1N1B4_5682 0.43 -1.1
122,175 - Pf1N1B4_5682 0.43 -0.5
122,507 - +1.3
122,507 - +0.9
122,507 - +0.3
122,673 - -1.3
123,362 - Pf1N1B4_5683 0.84 +1.3
123,444 + -1.3
123,444 + -0.3
123,445 - -2.9
123,445 - -0.3
123,445 - -1.9
123,445 - +0.3
123,494 + +2.0
123,495 - -0.9

Or see this region's nucleotide sequence