Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5508 and Pf1N1B4_5509 are separated by 56 nucleotides Pf1N1B4_5509 and Pf1N1B4_5510 are separated by 466 nucleotides
Pf1N1B4_5508 - hypothetical protein, at 258,583 to 258,807
_5508
Pf1N1B4_5509 - hypothetical protein, at 258,864 to 258,983
_5509
Pf1N1B4_5510 - hypothetical protein, at 259,450 to 259,563
_5510
Position (kb) 258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 257.596 kb on - strand at 257.658 kb on - strand at 257.658 kb on - strand at 257.666 kb on + strand at 257.819 kb on + strand at 257.819 kb on + strand at 257.820 kb on - strand at 257.900 kb on - strand at 257.965 kb on - strand at 257.972 kb on + strand at 257.972 kb on + strand at 257.972 kb on + strand at 257.972 kb on + strand at 257.972 kb on + strand at 257.973 kb on - strand at 257.973 kb on - strand at 258.081 kb on + strand at 258.082 kb on - strand at 258.131 kb on - strand at 258.197 kb on + strand at 258.197 kb on + strand at 258.197 kb on + strand at 258.197 kb on + strand at 258.198 kb on - strand at 258.209 kb on + strand at 258.209 kb on + strand at 258.210 kb on - strand at 258.210 kb on - strand at 258.220 kb on + strand at 258.221 kb on - strand at 258.361 kb on + strand at 258.361 kb on + strand at 258.362 kb on - strand at 258.362 kb on - strand at 258.362 kb on - strand at 258.364 kb on + strand at 258.364 kb on + strand at 258.364 kb on + strand at 258.364 kb on + strand at 258.501 kb on + strand at 258.501 kb on + strand at 258.501 kb on + strand at 258.501 kb on + strand at 258.501 kb on + strand at 258.501 kb on + strand at 258.502 kb on - strand at 258.502 kb on - strand at 258.502 kb on - strand at 258.565 kb on + strand at 258.565 kb on + strand at 258.565 kb on + strand at 258.566 kb on - strand at 258.566 kb on - strand at 258.588 kb on + strand at 258.588 kb on + strand at 258.588 kb on + strand at 258.589 kb on - strand at 258.589 kb on - strand at 258.589 kb on - strand at 258.589 kb on - strand at 258.589 kb on - strand at 258.592 kb on + strand at 258.593 kb on - strand at 258.593 kb on - strand at 258.722 kb on + strand, within Pf1N1B4_5508 at 258.722 kb on + strand, within Pf1N1B4_5508 at 258.832 kb on + strand at 258.832 kb on + strand at 258.833 kb on - strand at 258.833 kb on - strand at 258.886 kb on + strand, within Pf1N1B4_5509 at 258.887 kb on - strand, within Pf1N1B4_5509 at 258.922 kb on + strand, within Pf1N1B4_5509 at 259.010 kb on + strand at 259.011 kb on - strand at 259.024 kb on + strand at 259.061 kb on + strand at 259.061 kb on + strand at 259.062 kb on - strand at 259.062 kb on - strand at 259.062 kb on - strand at 259.062 kb on - strand at 259.103 kb on - strand at 259.112 kb on + strand at 259.157 kb on + strand at 259.158 kb on - strand at 259.158 kb on - strand at 259.158 kb on - strand at 259.158 kb on - strand at 259.196 kb on + strand at 259.196 kb on + strand at 259.196 kb on + strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.197 kb on - strand at 259.200 kb on + strand at 259.200 kb on + strand at 259.210 kb on - strand at 259.272 kb on + strand at 259.273 kb on - strand at 259.284 kb on - strand at 259.334 kb on + strand at 259.335 kb on - strand at 259.335 kb on - strand at 259.360 kb on + strand at 259.360 kb on + strand at 259.360 kb on + strand at 259.361 kb on - strand at 259.361 kb on - strand at 259.442 kb on + strand at 259.443 kb on - strand at 259.451 kb on + strand at 259.452 kb on - strand at 259.452 kb on - strand at 259.514 kb on + strand, within Pf1N1B4_5510 at 259.571 kb on + strand at 259.571 kb on + strand at 259.575 kb on + strand at 259.575 kb on + strand at 259.575 kb on + strand at 259.575 kb on + strand at 259.575 kb on + strand at 259.575 kb on + strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.617 kb on + strand at 259.707 kb on - strand at 259.729 kb on + strand at 259.730 kb on - strand at 259.730 kb on - strand at 259.730 kb on - strand at 259.730 kb on - strand at 259.733 kb on + strand at 259.733 kb on + strand at 259.733 kb on + strand at 259.734 kb on - strand at 259.734 kb on - strand at 259.734 kb on - strand at 259.734 kb on - strand at 259.758 kb on + strand at 259.758 kb on + strand at 259.758 kb on + strand at 259.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 257,596 - +0.8 257,658 - -0.7 257,658 - +1.2 257,666 + +0.7 257,819 + -0.6 257,819 + -0.4 257,820 - +0.4 257,900 - +1.4 257,965 - -1.0 257,972 + -0.0 257,972 + -2.2 257,972 + -0.0 257,972 + -0.4 257,972 + +2.6 257,973 - -2.0 257,973 - -0.0 258,081 + +1.3 258,082 - +1.8 258,131 - +0.3 258,197 + -1.3 258,197 + +1.4 258,197 + +0.7 258,197 + -0.0 258,198 - -0.3 258,209 + +0.3 258,209 + +0.4 258,210 - +1.8 258,210 - +2.0 258,220 + -0.4 258,221 - -0.3 258,361 + -0.4 258,361 + +1.6 258,362 - +0.5 258,362 - +0.4 258,362 - +0.3 258,364 + +0.2 258,364 + -0.4 258,364 + -1.0 258,364 + -0.6 258,501 + -0.4 258,501 + +0.9 258,501 + +1.3 258,501 + -0.0 258,501 + +0.6 258,501 + +1.3 258,502 - -0.0 258,502 - -1.4 258,502 - -1.0 258,565 + +1.0 258,565 + -0.4 258,565 + -0.9 258,566 - +0.5 258,566 - +0.3 258,588 + -1.0 258,588 + -0.0 258,588 + +1.0 258,589 - -1.8 258,589 - +0.3 258,589 - +0.7 258,589 - +0.6 258,589 - -1.4 258,592 + +2.8 258,593 - -1.0 258,593 - +2.0 258,722 + Pf1N1B4_5508 0.62 -0.5 258,722 + Pf1N1B4_5508 0.62 -0.6 258,832 + -2.8 258,832 + +0.2 258,833 - -0.5 258,833 - -0.0 258,886 + Pf1N1B4_5509 0.18 +1.0 258,887 - Pf1N1B4_5509 0.19 -0.8 258,922 + Pf1N1B4_5509 0.48 -1.5 259,010 + -0.0 259,011 - -0.4 259,024 + +2.0 259,061 + +0.6 259,061 + -0.0 259,062 - +0.1 259,062 - +1.0 259,062 - +0.6 259,062 - -0.5 259,103 - -1.6 259,112 + +1.6 259,157 + -1.0 259,158 - +2.0 259,158 - -2.0 259,158 - +0.7 259,158 - -1.4 259,196 + +1.0 259,196 + -1.0 259,196 + +1.1 259,197 - -0.0 259,197 - -1.6 259,197 - -1.0 259,197 - -0.0 259,200 + -0.7 259,200 + -1.6 259,210 - +0.4 259,272 + +2.1 259,273 - +1.7 259,284 - +0.3 259,334 + -0.7 259,335 - +1.0 259,335 - -0.3 259,360 + -0.3 259,360 + -0.4 259,360 + +0.6 259,361 - -0.0 259,361 - +1.8 259,442 + -1.0 259,443 - -1.4 259,451 + -0.4 259,452 - -0.0 259,452 - -1.0 259,514 + Pf1N1B4_5510 0.56 +0.4 259,571 + +2.3 259,571 + -0.0 259,575 + -0.0 259,575 + +1.0 259,575 + -1.0 259,575 + -2.4 259,575 + +0.4 259,575 + +0.8 259,576 - +0.2 259,576 - +0.5 259,617 + +0.3 259,707 - -0.0 259,729 + +1.6 259,730 - +0.5 259,730 - +0.6 259,730 - -1.4 259,730 - -3.4 259,733 + +1.6 259,733 + -0.0 259,733 + +2.4 259,734 - -0.1 259,734 - -1.8 259,734 - -2.6 259,734 - -0.4 259,758 + +2.0 259,758 + -0.0 259,758 + +1.4 259,797 + +2.1
Or see this region's nucleotide sequence