Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_546 and Pf1N1B4_547 are separated by 229 nucleotides Pf1N1B4_547 and Pf1N1B4_548 are separated by 49 nucleotides Pf1N1B4_548 and Pf1N1B4_549 are separated by 14 nucleotides Pf1N1B4_549 and Pf1N1B4_550 are separated by 3 nucleotides
Pf1N1B4_546 - FMN-dependent NADH-azoreductase, at 644,148 to 644,747
_546
Pf1N1B4_547 - 3-phosphoglycerate kinase, at 644,977 to 645,306
_547
Pf1N1B4_548 - Transcriptional regulator, LysR family, at 645,356 to 646,279
_548
Pf1N1B4_549 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 646,294 to 647,097
_549
Pf1N1B4_550 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 647,101 to 647,658
_550
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.386 kb on + strand, within Pf1N1B4_546 at 644.386 kb on + strand, within Pf1N1B4_546 at 644.387 kb on - strand, within Pf1N1B4_546 at 644.387 kb on - strand, within Pf1N1B4_546 at 644.458 kb on + strand, within Pf1N1B4_546 at 644.459 kb on - strand, within Pf1N1B4_546 at 644.459 kb on - strand, within Pf1N1B4_546 at 644.476 kb on - strand, within Pf1N1B4_546 at 644.481 kb on + strand, within Pf1N1B4_546 at 644.481 kb on + strand, within Pf1N1B4_546 at 644.481 kb on + strand, within Pf1N1B4_546 at 644.482 kb on - strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.615 kb on + strand, within Pf1N1B4_546 at 644.616 kb on - strand at 644.616 kb on - strand, within Pf1N1B4_546 at 644.616 kb on - strand, within Pf1N1B4_546 at 644.616 kb on - strand, within Pf1N1B4_546 at 644.616 kb on - strand, within Pf1N1B4_546 at 644.616 kb on - strand, within Pf1N1B4_546 at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.754 kb on + strand at 644.755 kb on - strand at 644.755 kb on - strand at 644.776 kb on + strand at 644.776 kb on + strand at 644.776 kb on + strand at 644.776 kb on + strand at 644.776 kb on + strand at 644.776 kb on + strand at 644.777 kb on - strand at 644.777 kb on - strand at 644.777 kb on - strand at 644.828 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.972 kb on + strand at 644.973 kb on - strand at 644.973 kb on - strand at 645.003 kb on + strand at 645.004 kb on - strand at 645.140 kb on + strand, within Pf1N1B4_547 at 645.177 kb on + strand, within Pf1N1B4_547 at 645.177 kb on + strand at 645.177 kb on + strand, within Pf1N1B4_547 at 645.178 kb on - strand, within Pf1N1B4_547 at 645.178 kb on - strand, within Pf1N1B4_547 at 645.191 kb on + strand, within Pf1N1B4_547 at 645.192 kb on - strand, within Pf1N1B4_547 at 645.237 kb on - strand, within Pf1N1B4_547 at 645.291 kb on + strand at 645.291 kb on + strand at 645.292 kb on - strand at 645.292 kb on - strand at 645.292 kb on - strand at 645.292 kb on - strand at 645.337 kb on - strand at 645.337 kb on - strand at 645.337 kb on - strand at 645.397 kb on - strand at 645.397 kb on - strand at 645.397 kb on - strand at 645.397 kb on - strand at 645.470 kb on + strand, within Pf1N1B4_548 at 645.470 kb on + strand, within Pf1N1B4_548 at 645.471 kb on - strand at 645.471 kb on - strand, within Pf1N1B4_548 at 645.513 kb on + strand, within Pf1N1B4_548 at 646.122 kb on + strand, within Pf1N1B4_548 at 646.160 kb on + strand, within Pf1N1B4_548 at 646.160 kb on + strand, within Pf1N1B4_548 at 646.160 kb on + strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.161 kb on - strand, within Pf1N1B4_548 at 646.166 kb on + strand, within Pf1N1B4_548 at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.289 kb on + strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.290 kb on - strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.293 kb on + strand at 646.294 kb on - strand at 646.294 kb on - strand at 646.294 kb on - strand at 646.294 kb on - strand at 646.330 kb on + strand at 646.451 kb on + strand, within Pf1N1B4_549 at 646.558 kb on + strand at 646.558 kb on + strand, within Pf1N1B4_549 at 646.558 kb on + strand, within Pf1N1B4_549 at 646.558 kb on + strand, within Pf1N1B4_549 at 646.558 kb on + strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.559 kb on - strand, within Pf1N1B4_549 at 646.562 kb on + strand, within Pf1N1B4_549 at 646.562 kb on + strand, within Pf1N1B4_549 at 646.562 kb on + strand, within Pf1N1B4_549 at 646.562 kb on + strand, within Pf1N1B4_549 at 646.562 kb on + strand, within Pf1N1B4_549 at 646.563 kb on - strand, within Pf1N1B4_549 at 646.563 kb on - strand, within Pf1N1B4_549 at 646.632 kb on - strand at 646.632 kb on - strand, within Pf1N1B4_549 at 646.632 kb on - strand, within Pf1N1B4_549 at 646.834 kb on + strand at 646.834 kb on + strand, within Pf1N1B4_549 at 646.835 kb on - strand, within Pf1N1B4_549 at 646.835 kb on - strand, within Pf1N1B4_549 at 646.860 kb on - strand, within Pf1N1B4_549 at 646.860 kb on - strand, within Pf1N1B4_549 at 646.860 kb on - strand, within Pf1N1B4_549 at 646.860 kb on - strand at 646.957 kb on + strand, within Pf1N1B4_549 at 646.961 kb on + strand, within Pf1N1B4_549 at 646.961 kb on + strand, within Pf1N1B4_549 at 646.961 kb on + strand, within Pf1N1B4_549 at 646.962 kb on - strand, within Pf1N1B4_549 at 646.962 kb on - strand, within Pf1N1B4_549 at 647.100 kb on + strand at 647.100 kb on + strand at 647.101 kb on - strand at 647.101 kb on - strand at 647.101 kb on - strand at 647.101 kb on - strand at 647.269 kb on + strand, within Pf1N1B4_550 at 647.269 kb on + strand, within Pf1N1B4_550 at 647.269 kb on + strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550 at 647.270 kb on - strand, within Pf1N1B4_550
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 644,386 + Pf1N1B4_546 0.40 -0.0 644,386 + Pf1N1B4_546 0.40 -1.6 644,387 - Pf1N1B4_546 0.40 -0.2 644,387 - Pf1N1B4_546 0.40 +0.6 644,458 + Pf1N1B4_546 0.52 +0.7 644,459 - Pf1N1B4_546 0.52 +0.3 644,459 - Pf1N1B4_546 0.52 -1.0 644,476 - Pf1N1B4_546 0.55 -1.3 644,481 + Pf1N1B4_546 0.56 -0.0 644,481 + Pf1N1B4_546 0.56 -0.5 644,481 + Pf1N1B4_546 0.56 +0.4 644,482 - Pf1N1B4_546 0.56 +1.8 644,615 + Pf1N1B4_546 0.78 +0.2 644,615 + Pf1N1B4_546 0.78 -1.3 644,615 + Pf1N1B4_546 0.78 -0.2 644,615 + Pf1N1B4_546 0.78 +0.6 644,615 + Pf1N1B4_546 0.78 +0.4 644,615 + Pf1N1B4_546 0.78 -1.4 644,615 + Pf1N1B4_546 0.78 +1.3 644,615 + Pf1N1B4_546 0.78 -1.0 644,616 - -0.0 644,616 - Pf1N1B4_546 0.78 -1.0 644,616 - Pf1N1B4_546 0.78 +0.5 644,616 - Pf1N1B4_546 0.78 +1.0 644,616 - Pf1N1B4_546 0.78 +0.5 644,616 - Pf1N1B4_546 0.78 -0.5 644,754 + -0.4 644,754 + -0.0 644,754 + -0.7 644,754 + +0.2 644,754 + -0.6 644,754 + +0.8 644,754 + -0.2 644,754 + +0.2 644,754 + +0.6 644,755 - -2.0 644,755 - -0.7 644,776 + -1.3 644,776 + +1.6 644,776 + -0.4 644,776 + -1.2 644,776 + -0.3 644,776 + -0.4 644,777 - +1.3 644,777 - -0.0 644,777 - -1.6 644,828 + +1.1 644,972 + +1.6 644,972 + +0.1 644,972 + -0.5 644,972 + -0.0 644,972 + +1.0 644,972 + -0.0 644,972 + -0.4 644,973 - -0.0 644,973 - -0.0 645,003 + -0.2 645,004 - +0.4 645,140 + Pf1N1B4_547 0.49 -0.1 645,177 + Pf1N1B4_547 0.61 +1.2 645,177 + +0.6 645,177 + Pf1N1B4_547 0.61 -2.2 645,178 - Pf1N1B4_547 0.61 +1.0 645,178 - Pf1N1B4_547 0.61 +0.3 645,191 + Pf1N1B4_547 0.65 -1.2 645,192 - Pf1N1B4_547 0.65 +1.3 645,237 - Pf1N1B4_547 0.79 +0.8 645,291 + -0.2 645,291 + +0.4 645,292 - -0.1 645,292 - +0.4 645,292 - -1.2 645,292 - -0.6 645,337 - -1.0 645,337 - +2.6 645,337 - +0.6 645,397 - +0.4 645,397 - -0.0 645,397 - -0.9 645,397 - +0.1 645,470 + Pf1N1B4_548 0.12 -1.6 645,470 + Pf1N1B4_548 0.12 +1.0 645,471 - -0.0 645,471 - Pf1N1B4_548 0.12 +0.6 645,513 + Pf1N1B4_548 0.17 -1.6 646,122 + Pf1N1B4_548 0.83 +1.0 646,160 + Pf1N1B4_548 0.87 -1.6 646,160 + Pf1N1B4_548 0.87 +0.4 646,160 + Pf1N1B4_548 0.87 -1.0 646,161 - Pf1N1B4_548 0.87 +2.0 646,161 - Pf1N1B4_548 0.87 +0.7 646,161 - Pf1N1B4_548 0.87 +1.2 646,161 - Pf1N1B4_548 0.87 +1.2 646,161 - Pf1N1B4_548 0.87 +1.0 646,161 - Pf1N1B4_548 0.87 +1.4 646,161 - Pf1N1B4_548 0.87 -0.0 646,166 + Pf1N1B4_548 0.88 +0.3 646,289 + +1.9 646,289 + +1.0 646,289 + -0.7 646,289 + +0.5 646,289 + +1.0 646,289 + -0.0 646,289 + +1.0 646,289 + +0.6 646,289 + +0.8 646,289 + +1.0 646,289 + -2.3 646,289 + +2.6 646,290 - -0.0 646,290 - -0.6 646,290 - +2.3 646,290 - +0.6 646,290 - -0.7 646,290 - -0.0 646,290 - +0.6 646,290 - -1.7 646,290 - -0.0 646,290 - +1.6 646,290 - -0.3 646,290 - -0.3 646,290 - +0.2 646,290 - -0.0 646,293 + +0.7 646,293 + -0.0 646,293 + +0.6 646,293 + -0.1 646,293 + +0.9 646,293 + +0.8 646,293 + +2.0 646,294 - +1.5 646,294 - -0.2 646,294 - +0.8 646,294 - -0.0 646,330 + +0.7 646,451 + Pf1N1B4_549 0.20 -1.4 646,558 + +0.6 646,558 + Pf1N1B4_549 0.33 +2.6 646,558 + Pf1N1B4_549 0.33 +1.6 646,558 + Pf1N1B4_549 0.33 -1.0 646,558 + Pf1N1B4_549 0.33 -1.6 646,559 - Pf1N1B4_549 0.33 +1.2 646,559 - Pf1N1B4_549 0.33 +1.0 646,559 - Pf1N1B4_549 0.33 -0.2 646,559 - Pf1N1B4_549 0.33 -0.0 646,559 - Pf1N1B4_549 0.33 +0.1 646,559 - Pf1N1B4_549 0.33 +0.4 646,559 - Pf1N1B4_549 0.33 +0.4 646,559 - Pf1N1B4_549 0.33 -0.0 646,559 - Pf1N1B4_549 0.33 +1.0 646,559 - -1.0 646,559 - Pf1N1B4_549 0.33 +0.3 646,559 - Pf1N1B4_549 0.33 -3.2 646,559 - Pf1N1B4_549 0.33 +0.3 646,559 - Pf1N1B4_549 0.33 -0.3 646,559 - Pf1N1B4_549 0.33 -0.0 646,559 - Pf1N1B4_549 0.33 -1.3 646,559 - Pf1N1B4_549 0.33 -0.4 646,562 + Pf1N1B4_549 0.33 -1.0 646,562 + Pf1N1B4_549 0.33 -0.3 646,562 + Pf1N1B4_549 0.33 +1.7 646,562 + Pf1N1B4_549 0.33 +1.6 646,562 + Pf1N1B4_549 0.33 -0.6 646,563 - Pf1N1B4_549 0.33 -0.6 646,563 - Pf1N1B4_549 0.33 +1.6 646,632 - +0.6 646,632 - Pf1N1B4_549 0.42 -0.2 646,632 - Pf1N1B4_549 0.42 +0.2 646,834 + -0.0 646,834 + Pf1N1B4_549 0.67 +2.2 646,835 - Pf1N1B4_549 0.67 -0.2 646,835 - Pf1N1B4_549 0.67 +1.0 646,860 - Pf1N1B4_549 0.70 +1.4 646,860 - Pf1N1B4_549 0.70 -0.6 646,860 - Pf1N1B4_549 0.70 -0.5 646,860 - +1.0 646,957 + Pf1N1B4_549 0.82 +1.7 646,961 + Pf1N1B4_549 0.83 -0.0 646,961 + Pf1N1B4_549 0.83 -2.0 646,961 + Pf1N1B4_549 0.83 -0.3 646,962 - Pf1N1B4_549 0.83 -0.4 646,962 - Pf1N1B4_549 0.83 +1.2 647,100 + +0.6 647,100 + -0.3 647,101 - -0.2 647,101 - -0.0 647,101 - -1.5 647,101 - -0.6 647,269 + Pf1N1B4_550 0.30 +1.0 647,269 + Pf1N1B4_550 0.30 -0.4 647,269 + Pf1N1B4_550 0.30 +0.5 647,270 - Pf1N1B4_550 0.30 -2.0 647,270 - Pf1N1B4_550 0.30 -1.9 647,270 - Pf1N1B4_550 0.30 +1.3 647,270 - Pf1N1B4_550 0.30 +0.8 647,270 - Pf1N1B4_550 0.30 +0.7 647,270 - Pf1N1B4_550 0.30 -0.5
Or see this region's nucleotide sequence