Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0061 and Shewana3_0062 are separated by 134 nucleotides Shewana3_0062 and Shewana3_0063 are separated by 99 nucleotides Shewana3_0063 and Shewana3_0064 are separated by 24 nucleotides
Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821
_0061
Shewana3_0062: Shewana3_0062 - hypothetical protein (RefSeq), at 72,956 to 73,693
_0062
Shewana3_0063: Shewana3_0063 - NLP/P60 protein (RefSeq), at 73,793 to 74,272
_0063
Shewana3_0064: Shewana3_0064 - major facilitator transporter (RefSeq), at 74,297 to 75,745
_0064
Position (kb)
73
74
75 Strain fitness (log2 ratio)
-2
-1
0
1 at 72.846 kb on - strand at 72.928 kb on - strand at 73.158 kb on + strand, within Shewana3_0062 at 73.159 kb on + strand, within Shewana3_0062 at 73.270 kb on - strand, within Shewana3_0062 at 73.312 kb on - strand, within Shewana3_0062 at 73.458 kb on - strand, within Shewana3_0062 at 73.573 kb on - strand, within Shewana3_0062 at 73.693 kb on + strand at 73.797 kb on + strand at 73.843 kb on - strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.870 kb on + strand, within Shewana3_0063 at 73.899 kb on - strand, within Shewana3_0063 at 74.035 kb on + strand, within Shewana3_0063 at 74.112 kb on - strand, within Shewana3_0063 at 74.285 kb on + strand at 74.293 kb on - strand at 74.301 kb on - strand at 74.330 kb on + strand at 74.481 kb on + strand, within Shewana3_0064 at 74.573 kb on - strand, within Shewana3_0064 at 74.733 kb on - strand, within Shewana3_0064 at 74.773 kb on - strand, within Shewana3_0064 at 74.962 kb on + strand, within Shewana3_0064 at 74.989 kb on - strand, within Shewana3_0064 at 75.005 kb on + strand, within Shewana3_0064 at 75.011 kb on + strand, within Shewana3_0064 at 75.019 kb on - strand, within Shewana3_0064 at 75.026 kb on + strand, within Shewana3_0064 at 75.045 kb on + strand, within Shewana3_0064 at 75.133 kb on + strand, within Shewana3_0064
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 72,846 - +0.3 72,928 - +0.7 73,158 + Shewana3_0062 0.27 -0.1 73,159 + Shewana3_0062 0.28 -0.0 73,270 - Shewana3_0062 0.43 +0.2 73,312 - Shewana3_0062 0.48 -0.6 73,458 - Shewana3_0062 0.68 -0.2 73,573 - Shewana3_0062 0.84 -0.1 73,693 + -1.1 73,797 + -0.2 73,843 - Shewana3_0063 0.10 +0.7 73,870 + Shewana3_0063 0.16 +0.3 73,870 + Shewana3_0063 0.16 +0.3 73,899 - Shewana3_0063 0.22 +0.7 74,035 + Shewana3_0063 0.50 +0.3 74,112 - Shewana3_0063 0.66 -0.1 74,285 + -0.2 74,293 - -0.6 74,301 - -0.6 74,330 + -1.0 74,481 + Shewana3_0064 0.13 -0.7 74,573 - Shewana3_0064 0.19 +0.8 74,733 - Shewana3_0064 0.30 -0.3 74,773 - Shewana3_0064 0.33 -0.3 74,962 + Shewana3_0064 0.46 +0.4 74,989 - Shewana3_0064 0.48 -0.4 75,005 + Shewana3_0064 0.49 -0.0 75,011 + Shewana3_0064 0.49 +0.1 75,019 - Shewana3_0064 0.50 -2.1 75,026 + Shewana3_0064 0.50 -0.1 75,045 + Shewana3_0064 0.52 +0.5 75,133 + Shewana3_0064 0.58 +0.0
Or see this region's nucleotide sequence