Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5917

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5915 and Pf1N1B4_5916 are separated by 33 nucleotidesPf1N1B4_5916 and Pf1N1B4_5917 are separated by 34 nucleotidesPf1N1B4_5917 and Pf1N1B4_5918 are separated by 323 nucleotides Pf1N1B4_5915 - Transcriptional regulator, AraC family, at 357,290 to 357,757 _5915 Pf1N1B4_5916 - Similar to non-heme chloroperoxidase, sll5080 homolog, at 357,791 to 358,615 _5916 Pf1N1B4_5917 - Multimeric flavodoxin WrbA, at 358,650 to 359,225 _5917 Pf1N1B4_5918 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 359,549 to 362,353 _5918 Position (kb) 358 359 360Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 357.747 kb on + strandat 357.747 kb on + strandat 357.748 kb on - strandat 357.755 kb on + strandat 357.871 kb on - strandat 357.998 kb on - strandat 358.033 kb on - strand, within Pf1N1B4_5916at 358.149 kb on + strand, within Pf1N1B4_5916at 358.398 kb on + strand, within Pf1N1B4_5916at 358.398 kb on + strand, within Pf1N1B4_5916at 358.399 kb on - strand, within Pf1N1B4_5916at 358.576 kb on - strandat 358.578 kb on + strandat 358.578 kb on + strandat 358.655 kb on - strandat 358.655 kb on - strandat 358.655 kb on - strandat 358.655 kb on - strandat 358.655 kb on - strandat 359.041 kb on + strand, within Pf1N1B4_5917at 359.042 kb on - strand, within Pf1N1B4_5917at 359.042 kb on - strand, within Pf1N1B4_5917at 359.042 kb on - strand, within Pf1N1B4_5917at 359.123 kb on + strand, within Pf1N1B4_5917at 359.203 kb on + strandat 359.203 kb on + strandat 359.325 kb on + strandat 359.347 kb on - strandat 359.402 kb on + strandat 359.403 kb on - strandat 359.403 kb on - strandat 359.502 kb on + strandat 359.503 kb on - strandat 359.503 kb on - strandat 359.522 kb on + strandat 359.598 kb on - strandat 359.819 kb on + strandat 359.819 kb on + strandat 359.819 kb on + strandat 359.820 kb on - strandat 359.881 kb on - strand, within Pf1N1B4_5918at 359.881 kb on - strand, within Pf1N1B4_5918at 359.924 kb on - strand, within Pf1N1B4_5918

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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357,747 + +1.6
357,747 + -0.1
357,748 - -2.3
357,755 + -1.2
357,871 - -0.9
357,998 - +1.7
358,033 - Pf1N1B4_5916 0.29 -1.3
358,149 + Pf1N1B4_5916 0.43 +0.3
358,398 + Pf1N1B4_5916 0.74 +0.0
358,398 + Pf1N1B4_5916 0.74 -1.5
358,399 - Pf1N1B4_5916 0.74 +1.0
358,576 - +0.7
358,578 + -1.5
358,578 + +0.3
358,655 - -0.3
358,655 - -1.3
358,655 - +0.4
358,655 - -0.0
358,655 - -0.7
359,041 + Pf1N1B4_5917 0.68 +0.5
359,042 - Pf1N1B4_5917 0.68 -2.3
359,042 - Pf1N1B4_5917 0.68 +0.3
359,042 - Pf1N1B4_5917 0.68 +0.7
359,123 + Pf1N1B4_5917 0.82 +2.5
359,203 + -1.3
359,203 + -0.8
359,325 + +1.3
359,347 - -0.3
359,402 + +1.3
359,403 - +0.7
359,403 - -1.6
359,502 + +0.3
359,503 - +1.7
359,503 - +3.9
359,522 + +0.3
359,598 - +0.7
359,819 + -1.5
359,819 + +1.1
359,819 + +0.3
359,820 - -1.3
359,881 - Pf1N1B4_5918 0.12 +0.9
359,881 - Pf1N1B4_5918 0.12 -1.9
359,924 - Pf1N1B4_5918 0.13 -1.3

Or see this region's nucleotide sequence