Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5745

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5744 and Pf1N1B4_5745 overlap by 7 nucleotidesPf1N1B4_5745 and Pf1N1B4_5746 are separated by 10 nucleotides Pf1N1B4_5744 - FIG138517: Putative lipid carrier protein, at 186,266 to 186,736 _5744 Pf1N1B4_5745 - FIG139928: Putative protease, at 186,730 to 187,620 _5745 Pf1N1B4_5746 - FIG139552: Putative protease, at 187,631 to 188,626 _5746 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 185.796 kb on - strandat 186.092 kb on + strandat 186.118 kb on - strandat 186.161 kb on - strandat 186.161 kb on - strandat 186.419 kb on - strand, within Pf1N1B4_5744at 186.450 kb on - strandat 186.840 kb on - strand, within Pf1N1B4_5745at 187.094 kb on + strand, within Pf1N1B4_5745at 187.263 kb on - strand, within Pf1N1B4_5745at 187.788 kb on + strand, within Pf1N1B4_5746at 187.788 kb on + strandat 188.085 kb on + strand, within Pf1N1B4_5746at 188.086 kb on - strandat 188.123 kb on + strand, within Pf1N1B4_5746at 188.123 kb on + strand, within Pf1N1B4_5746at 188.124 kb on - strand, within Pf1N1B4_5746at 188.124 kb on - strandat 188.180 kb on + strand, within Pf1N1B4_5746at 188.181 kb on - strand, within Pf1N1B4_5746at 188.241 kb on + strand, within Pf1N1B4_5746at 188.242 kb on - strand, within Pf1N1B4_5746at 188.322 kb on + strand, within Pf1N1B4_5746at 188.322 kb on + strand, within Pf1N1B4_5746at 188.322 kb on + strand, within Pf1N1B4_5746at 188.553 kb on + strandat 188.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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185,796 - +0.3
186,092 + -0.5
186,118 - +0.7
186,161 - +0.3
186,161 - +0.1
186,419 - Pf1N1B4_5744 0.32 -1.9
186,450 - -0.3
186,840 - Pf1N1B4_5745 0.12 +1.9
187,094 + Pf1N1B4_5745 0.41 +0.0
187,263 - Pf1N1B4_5745 0.60 +1.7
187,788 + Pf1N1B4_5746 0.16 -0.3
187,788 + +0.7
188,085 + Pf1N1B4_5746 0.46 -0.9
188,086 - -0.3
188,123 + Pf1N1B4_5746 0.49 +1.3
188,123 + Pf1N1B4_5746 0.49 -1.3
188,124 - Pf1N1B4_5746 0.49 +0.7
188,124 - -3.1
188,180 + Pf1N1B4_5746 0.55 +0.2
188,181 - Pf1N1B4_5746 0.55 -0.7
188,241 + Pf1N1B4_5746 0.61 +0.8
188,242 - Pf1N1B4_5746 0.61 -0.3
188,322 + Pf1N1B4_5746 0.69 -1.9
188,322 + Pf1N1B4_5746 0.69 +1.3
188,322 + Pf1N1B4_5746 0.69 +1.1
188,553 + +1.3
188,554 - -1.3

Or see this region's nucleotide sequence