Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5312

Experiment: Cisplatin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5311 and Pf1N1B4_5312 are separated by 242 nucleotidesPf1N1B4_5312 and Pf1N1B4_5313 are separated by 40 nucleotides Pf1N1B4_5311 - hypothetical protein, at 61,965 to 62,252 _5311 Pf1N1B4_5312 - Putative activity regulator of membrane protease YbbK, at 62,495 to 62,932 _5312 Pf1N1B4_5313 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 62,973 to 63,839 _5313 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 61.496 kb on + strandat 61.534 kb on + strandat 61.605 kb on - strandat 61.675 kb on + strandat 61.675 kb on + strandat 61.676 kb on - strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.679 kb on + strandat 61.680 kb on - strandat 61.714 kb on + strandat 61.714 kb on + strandat 61.723 kb on + strandat 61.866 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.920 kb on + strandat 61.921 kb on - strandat 61.921 kb on - strandat 61.921 kb on - strandat 62.067 kb on + strand, within Pf1N1B4_5311at 62.068 kb on - strand, within Pf1N1B4_5311at 62.113 kb on + strand, within Pf1N1B4_5311at 62.113 kb on + strand, within Pf1N1B4_5311at 62.279 kb on + strandat 62.279 kb on + strandat 62.279 kb on + strandat 62.279 kb on + strandat 62.323 kb on + strandat 62.323 kb on + strandat 62.323 kb on + strandat 62.323 kb on + strandat 62.324 kb on - strandat 62.324 kb on - strandat 62.324 kb on - strandat 62.324 kb on - strandat 62.329 kb on + strandat 62.330 kb on + strandat 62.330 kb on + strandat 62.331 kb on - strandat 62.372 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.387 kb on + strandat 62.388 kb on - strandat 62.388 kb on - strandat 62.388 kb on - strandat 62.421 kb on + strandat 62.421 kb on + strandat 62.421 kb on + strandat 62.421 kb on + strandat 62.430 kb on + strandat 62.456 kb on + strandat 62.456 kb on + strandat 62.457 kb on - strandat 62.614 kb on + strand, within Pf1N1B4_5312at 62.614 kb on + strandat 62.615 kb on - strand, within Pf1N1B4_5312at 62.634 kb on + strand, within Pf1N1B4_5312at 62.634 kb on + strand, within Pf1N1B4_5312at 62.635 kb on - strand, within Pf1N1B4_5312at 62.725 kb on + strand, within Pf1N1B4_5312at 62.826 kb on + strand, within Pf1N1B4_5312at 62.826 kb on + strand, within Pf1N1B4_5312at 62.827 kb on - strand, within Pf1N1B4_5312at 62.892 kb on + strandat 62.892 kb on + strandat 62.892 kb on + strandat 62.892 kb on + strandat 62.893 kb on - strandat 62.952 kb on + strandat 62.952 kb on + strandat 62.952 kb on + strandat 62.968 kb on + strandat 62.968 kb on + strandat 62.968 kb on + strandat 62.968 kb on + strandat 62.971 kb on + strandat 62.971 kb on + strandat 62.972 kb on - strandat 63.131 kb on - strand, within Pf1N1B4_5313at 63.262 kb on + strand, within Pf1N1B4_5313at 63.262 kb on + strand, within Pf1N1B4_5313at 63.262 kb on + strand, within Pf1N1B4_5313at 63.262 kb on + strand, within Pf1N1B4_5313at 63.395 kb on + strand, within Pf1N1B4_5313at 63.395 kb on + strand, within Pf1N1B4_5313at 63.445 kb on + strand, within Pf1N1B4_5313at 63.445 kb on + strand, within Pf1N1B4_5313at 63.445 kb on + strand, within Pf1N1B4_5313at 63.446 kb on - strand, within Pf1N1B4_5313at 63.446 kb on - strandat 63.449 kb on + strand, within Pf1N1B4_5313at 63.450 kb on - strand, within Pf1N1B4_5313at 63.514 kb on + strand, within Pf1N1B4_5313at 63.547 kb on + strand, within Pf1N1B4_5313at 63.547 kb on + strand, within Pf1N1B4_5313at 63.564 kb on - strand, within Pf1N1B4_5313at 63.711 kb on + strandat 63.711 kb on + strand, within Pf1N1B4_5313at 63.712 kb on - strandat 63.729 kb on + strand, within Pf1N1B4_5313at 63.729 kb on + strand, within Pf1N1B4_5313at 63.730 kb on - strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.731 kb on + strand, within Pf1N1B4_5313at 63.732 kb on - strand, within Pf1N1B4_5313at 63.732 kb on - strand, within Pf1N1B4_5313at 63.820 kb on + strandat 63.821 kb on - strandat 63.821 kb on - strandat 63.898 kb on + strandat 63.899 kb on - strandat 63.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml
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61,496 + -1.0
61,534 + +1.1
61,605 - -0.9
61,675 + +0.3
61,675 + +1.2
61,676 - +0.1
61,679 + +0.5
61,679 + -0.5
61,679 + -1.2
61,679 + -0.4
61,679 + -1.6
61,679 + +3.1
61,679 + -0.1
61,679 + -0.5
61,679 + +0.8
61,680 - -2.2
61,714 + +2.1
61,714 + +0.6
61,723 + -1.5
61,866 + +2.0
61,920 + +1.4
61,920 + +0.8
61,920 + -0.9
61,920 + +2.4
61,920 + +0.4
61,920 + +0.8
61,920 + -0.1
61,920 + +0.9
61,920 + +1.6
61,920 + -0.6
61,920 + -0.9
61,920 + +1.8
61,920 + +0.7
61,920 + +2.9
61,920 + -0.6
61,921 - +1.1
61,921 - -1.5
61,921 - -1.5
62,067 + Pf1N1B4_5311 0.35 +2.7
62,068 - Pf1N1B4_5311 0.36 +0.7
62,113 + Pf1N1B4_5311 0.51 -2.1
62,113 + Pf1N1B4_5311 0.51 +3.6
62,279 + +1.1
62,279 + +2.5
62,279 + +2.1
62,279 + +1.9
62,323 + +2.7
62,323 + +1.8
62,323 + +0.5
62,323 + +0.7
62,324 - -0.4
62,324 - -1.8
62,324 - +2.0
62,324 - -1.5
62,329 + +1.8
62,330 + -0.5
62,330 + +1.1
62,331 - -0.1
62,372 + +1.0
62,387 + +1.5
62,387 + +1.5
62,387 + +1.6
62,387 + +1.4
62,387 + +2.0
62,387 + +0.6
62,387 + -0.4
62,387 + +1.9
62,387 + +0.7
62,387 + +2.1
62,388 - +0.7
62,388 - -2.1
62,388 - +1.1
62,421 + -0.5
62,421 + +0.9
62,421 + +0.6
62,421 + +1.9
62,430 + +0.8
62,456 + -1.9
62,456 + +0.3
62,457 - +0.5
62,614 + Pf1N1B4_5312 0.27 -0.9
62,614 + +0.1
62,615 - Pf1N1B4_5312 0.27 -0.7
62,634 + Pf1N1B4_5312 0.32 -0.2
62,634 + Pf1N1B4_5312 0.32 -0.9
62,635 - Pf1N1B4_5312 0.32 -1.6
62,725 + Pf1N1B4_5312 0.53 +1.3
62,826 + Pf1N1B4_5312 0.76 -1.9
62,826 + Pf1N1B4_5312 0.76 -1.1
62,827 - Pf1N1B4_5312 0.76 -0.9
62,892 + +1.0
62,892 + +3.9
62,892 + +1.4
62,892 + +0.1
62,893 - +1.1
62,952 + +0.8
62,952 + -1.2
62,952 + +0.3
62,968 + -2.2
62,968 + +0.5
62,968 + -0.5
62,968 + -0.2
62,971 + -0.1
62,971 + +2.4
62,972 - -1.9
63,131 - Pf1N1B4_5313 0.18 -2.7
63,262 + Pf1N1B4_5313 0.33 -0.9
63,262 + Pf1N1B4_5313 0.33 -0.9
63,262 + Pf1N1B4_5313 0.33 -0.0
63,262 + Pf1N1B4_5313 0.33 +0.3
63,395 + Pf1N1B4_5313 0.49 -1.5
63,395 + Pf1N1B4_5313 0.49 +1.3
63,445 + Pf1N1B4_5313 0.54 +1.0
63,445 + Pf1N1B4_5313 0.54 -0.3
63,445 + Pf1N1B4_5313 0.54 +0.1
63,446 - Pf1N1B4_5313 0.55 -0.5
63,446 - +0.1
63,449 + Pf1N1B4_5313 0.55 +0.1
63,450 - Pf1N1B4_5313 0.55 -0.1
63,514 + Pf1N1B4_5313 0.62 +2.3
63,547 + Pf1N1B4_5313 0.66 -1.5
63,547 + Pf1N1B4_5313 0.66 +1.0
63,564 - Pf1N1B4_5313 0.68 -1.9
63,711 + -0.9
63,711 + Pf1N1B4_5313 0.85 +1.6
63,712 - -1.5
63,729 + Pf1N1B4_5313 0.87 -0.3
63,729 + Pf1N1B4_5313 0.87 +0.4
63,730 - Pf1N1B4_5313 0.87 -0.9
63,731 + Pf1N1B4_5313 0.87 +1.1
63,731 + Pf1N1B4_5313 0.87 +0.1
63,731 + Pf1N1B4_5313 0.87 +0.1
63,731 + Pf1N1B4_5313 0.87 +0.3
63,731 + Pf1N1B4_5313 0.87 -0.5
63,731 + Pf1N1B4_5313 0.87 +0.3
63,731 + Pf1N1B4_5313 0.87 +0.6
63,731 + Pf1N1B4_5313 0.87 -0.5
63,732 - Pf1N1B4_5313 0.88 -0.5
63,732 - Pf1N1B4_5313 0.88 +0.9
63,820 + +0.6
63,821 - +2.3
63,821 - +1.2
63,898 + -1.5
63,899 - +0.4
63,914 + +1.1

Or see this region's nucleotide sequence