Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5311 and Pf1N1B4_5312 are separated by 242 nucleotides Pf1N1B4_5312 and Pf1N1B4_5313 are separated by 40 nucleotides
Pf1N1B4_5311 - hypothetical protein, at 61,965 to 62,252
_5311
Pf1N1B4_5312 - Putative activity regulator of membrane protease YbbK, at 62,495 to 62,932
_5312
Pf1N1B4_5313 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 62,973 to 63,839
_5313
Position (kb)
62
63 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 61.496 kb on + strand at 61.534 kb on + strand at 61.605 kb on - strand at 61.675 kb on + strand at 61.675 kb on + strand at 61.676 kb on - strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.679 kb on + strand at 61.680 kb on - strand at 61.714 kb on + strand at 61.714 kb on + strand at 61.723 kb on + strand at 61.866 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.920 kb on + strand at 61.921 kb on - strand at 61.921 kb on - strand at 61.921 kb on - strand at 62.067 kb on + strand, within Pf1N1B4_5311 at 62.068 kb on - strand, within Pf1N1B4_5311 at 62.113 kb on + strand, within Pf1N1B4_5311 at 62.113 kb on + strand, within Pf1N1B4_5311 at 62.279 kb on + strand at 62.279 kb on + strand at 62.279 kb on + strand at 62.279 kb on + strand at 62.323 kb on + strand at 62.323 kb on + strand at 62.323 kb on + strand at 62.323 kb on + strand at 62.324 kb on - strand at 62.324 kb on - strand at 62.324 kb on - strand at 62.324 kb on - strand at 62.329 kb on + strand at 62.330 kb on + strand at 62.330 kb on + strand at 62.331 kb on - strand at 62.372 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.387 kb on + strand at 62.388 kb on - strand at 62.388 kb on - strand at 62.388 kb on - strand at 62.421 kb on + strand at 62.421 kb on + strand at 62.421 kb on + strand at 62.421 kb on + strand at 62.430 kb on + strand at 62.456 kb on + strand at 62.456 kb on + strand at 62.457 kb on - strand at 62.614 kb on + strand, within Pf1N1B4_5312 at 62.614 kb on + strand at 62.615 kb on - strand, within Pf1N1B4_5312 at 62.634 kb on + strand, within Pf1N1B4_5312 at 62.634 kb on + strand, within Pf1N1B4_5312 at 62.635 kb on - strand, within Pf1N1B4_5312 at 62.725 kb on + strand, within Pf1N1B4_5312 at 62.826 kb on + strand, within Pf1N1B4_5312 at 62.826 kb on + strand, within Pf1N1B4_5312 at 62.827 kb on - strand, within Pf1N1B4_5312 at 62.892 kb on + strand at 62.892 kb on + strand at 62.892 kb on + strand at 62.892 kb on + strand at 62.893 kb on - strand at 62.952 kb on + strand at 62.952 kb on + strand at 62.952 kb on + strand at 62.968 kb on + strand at 62.968 kb on + strand at 62.968 kb on + strand at 62.968 kb on + strand at 62.971 kb on + strand at 62.971 kb on + strand at 62.972 kb on - strand at 63.131 kb on - strand, within Pf1N1B4_5313 at 63.262 kb on + strand, within Pf1N1B4_5313 at 63.262 kb on + strand, within Pf1N1B4_5313 at 63.262 kb on + strand, within Pf1N1B4_5313 at 63.262 kb on + strand, within Pf1N1B4_5313 at 63.395 kb on + strand, within Pf1N1B4_5313 at 63.395 kb on + strand, within Pf1N1B4_5313 at 63.445 kb on + strand, within Pf1N1B4_5313 at 63.445 kb on + strand, within Pf1N1B4_5313 at 63.445 kb on + strand, within Pf1N1B4_5313 at 63.446 kb on - strand, within Pf1N1B4_5313 at 63.446 kb on - strand at 63.449 kb on + strand, within Pf1N1B4_5313 at 63.450 kb on - strand, within Pf1N1B4_5313 at 63.514 kb on + strand, within Pf1N1B4_5313 at 63.547 kb on + strand, within Pf1N1B4_5313 at 63.547 kb on + strand, within Pf1N1B4_5313 at 63.564 kb on - strand, within Pf1N1B4_5313 at 63.711 kb on + strand at 63.711 kb on + strand, within Pf1N1B4_5313 at 63.712 kb on - strand at 63.729 kb on + strand, within Pf1N1B4_5313 at 63.729 kb on + strand, within Pf1N1B4_5313 at 63.730 kb on - strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.731 kb on + strand, within Pf1N1B4_5313 at 63.732 kb on - strand, within Pf1N1B4_5313 at 63.732 kb on - strand, within Pf1N1B4_5313 at 63.820 kb on + strand at 63.821 kb on - strand at 63.821 kb on - strand at 63.898 kb on + strand at 63.899 kb on - strand at 63.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 61,496 + -1.0 61,534 + +1.1 61,605 - -0.9 61,675 + +0.3 61,675 + +1.2 61,676 - +0.1 61,679 + +0.5 61,679 + -0.5 61,679 + -1.2 61,679 + -0.4 61,679 + -1.6 61,679 + +3.1 61,679 + -0.1 61,679 + -0.5 61,679 + +0.8 61,680 - -2.2 61,714 + +2.1 61,714 + +0.6 61,723 + -1.5 61,866 + +2.0 61,920 + +1.4 61,920 + +0.8 61,920 + -0.9 61,920 + +2.4 61,920 + +0.4 61,920 + +0.8 61,920 + -0.1 61,920 + +0.9 61,920 + +1.6 61,920 + -0.6 61,920 + -0.9 61,920 + +1.8 61,920 + +0.7 61,920 + +2.9 61,920 + -0.6 61,921 - +1.1 61,921 - -1.5 61,921 - -1.5 62,067 + Pf1N1B4_5311 0.35 +2.7 62,068 - Pf1N1B4_5311 0.36 +0.7 62,113 + Pf1N1B4_5311 0.51 -2.1 62,113 + Pf1N1B4_5311 0.51 +3.6 62,279 + +1.1 62,279 + +2.5 62,279 + +2.1 62,279 + +1.9 62,323 + +2.7 62,323 + +1.8 62,323 + +0.5 62,323 + +0.7 62,324 - -0.4 62,324 - -1.8 62,324 - +2.0 62,324 - -1.5 62,329 + +1.8 62,330 + -0.5 62,330 + +1.1 62,331 - -0.1 62,372 + +1.0 62,387 + +1.5 62,387 + +1.5 62,387 + +1.6 62,387 + +1.4 62,387 + +2.0 62,387 + +0.6 62,387 + -0.4 62,387 + +1.9 62,387 + +0.7 62,387 + +2.1 62,388 - +0.7 62,388 - -2.1 62,388 - +1.1 62,421 + -0.5 62,421 + +0.9 62,421 + +0.6 62,421 + +1.9 62,430 + +0.8 62,456 + -1.9 62,456 + +0.3 62,457 - +0.5 62,614 + Pf1N1B4_5312 0.27 -0.9 62,614 + +0.1 62,615 - Pf1N1B4_5312 0.27 -0.7 62,634 + Pf1N1B4_5312 0.32 -0.2 62,634 + Pf1N1B4_5312 0.32 -0.9 62,635 - Pf1N1B4_5312 0.32 -1.6 62,725 + Pf1N1B4_5312 0.53 +1.3 62,826 + Pf1N1B4_5312 0.76 -1.9 62,826 + Pf1N1B4_5312 0.76 -1.1 62,827 - Pf1N1B4_5312 0.76 -0.9 62,892 + +1.0 62,892 + +3.9 62,892 + +1.4 62,892 + +0.1 62,893 - +1.1 62,952 + +0.8 62,952 + -1.2 62,952 + +0.3 62,968 + -2.2 62,968 + +0.5 62,968 + -0.5 62,968 + -0.2 62,971 + -0.1 62,971 + +2.4 62,972 - -1.9 63,131 - Pf1N1B4_5313 0.18 -2.7 63,262 + Pf1N1B4_5313 0.33 -0.9 63,262 + Pf1N1B4_5313 0.33 -0.9 63,262 + Pf1N1B4_5313 0.33 -0.0 63,262 + Pf1N1B4_5313 0.33 +0.3 63,395 + Pf1N1B4_5313 0.49 -1.5 63,395 + Pf1N1B4_5313 0.49 +1.3 63,445 + Pf1N1B4_5313 0.54 +1.0 63,445 + Pf1N1B4_5313 0.54 -0.3 63,445 + Pf1N1B4_5313 0.54 +0.1 63,446 - Pf1N1B4_5313 0.55 -0.5 63,446 - +0.1 63,449 + Pf1N1B4_5313 0.55 +0.1 63,450 - Pf1N1B4_5313 0.55 -0.1 63,514 + Pf1N1B4_5313 0.62 +2.3 63,547 + Pf1N1B4_5313 0.66 -1.5 63,547 + Pf1N1B4_5313 0.66 +1.0 63,564 - Pf1N1B4_5313 0.68 -1.9 63,711 + -0.9 63,711 + Pf1N1B4_5313 0.85 +1.6 63,712 - -1.5 63,729 + Pf1N1B4_5313 0.87 -0.3 63,729 + Pf1N1B4_5313 0.87 +0.4 63,730 - Pf1N1B4_5313 0.87 -0.9 63,731 + Pf1N1B4_5313 0.87 +1.1 63,731 + Pf1N1B4_5313 0.87 +0.1 63,731 + Pf1N1B4_5313 0.87 +0.1 63,731 + Pf1N1B4_5313 0.87 +0.3 63,731 + Pf1N1B4_5313 0.87 -0.5 63,731 + Pf1N1B4_5313 0.87 +0.3 63,731 + Pf1N1B4_5313 0.87 +0.6 63,731 + Pf1N1B4_5313 0.87 -0.5 63,732 - Pf1N1B4_5313 0.88 -0.5 63,732 - Pf1N1B4_5313 0.88 +0.9 63,820 + +0.6 63,821 - +2.3 63,821 - +1.2 63,898 + -1.5 63,899 - +0.4 63,914 + +1.1
Or see this region's nucleotide sequence