Experiment: Cisplatin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4697 and Pf1N1B4_4698 are separated by 1 nucleotides Pf1N1B4_4698 and Pf1N1B4_4699 are separated by 84 nucleotides
Pf1N1B4_4697 - Phenylacetate-coenzyme A ligase (EC 6.2.1.30), at 5,189,028 to 5,191,430
_4697
Pf1N1B4_4698 - rfbN protein, at 5,191,432 to 5,192,499
_4698
Pf1N1B4_4699 - Multidrug translocase MdfA, at 5,192,584 to 5,193,825
_4699
Position (kb) 5191
5192
5193 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5190.726 kb on + strand, within Pf1N1B4_4697 at 5190.727 kb on - strand, within Pf1N1B4_4697 at 5190.727 kb on - strand, within Pf1N1B4_4697 at 5190.734 kb on + strand, within Pf1N1B4_4697 at 5190.852 kb on + strand, within Pf1N1B4_4697 at 5190.852 kb on + strand, within Pf1N1B4_4697 at 5191.032 kb on - strand, within Pf1N1B4_4697 at 5191.155 kb on - strand, within Pf1N1B4_4697 at 5191.155 kb on - strand at 5191.243 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.426 kb on + strand at 5191.430 kb on + strand at 5191.431 kb on - strand at 5191.691 kb on + strand, within Pf1N1B4_4698 at 5191.692 kb on - strand, within Pf1N1B4_4698 at 5191.728 kb on + strand, within Pf1N1B4_4698 at 5191.730 kb on + strand, within Pf1N1B4_4698 at 5191.731 kb on - strand at 5191.731 kb on - strand, within Pf1N1B4_4698 at 5191.731 kb on - strand, within Pf1N1B4_4698 at 5191.811 kb on + strand, within Pf1N1B4_4698 at 5192.082 kb on - strand, within Pf1N1B4_4698 at 5192.082 kb on - strand, within Pf1N1B4_4698 at 5192.105 kb on + strand, within Pf1N1B4_4698 at 5192.105 kb on + strand, within Pf1N1B4_4698 at 5192.106 kb on - strand, within Pf1N1B4_4698 at 5192.106 kb on - strand, within Pf1N1B4_4698 at 5192.157 kb on - strand, within Pf1N1B4_4698 at 5192.552 kb on - strand at 5192.573 kb on - strand at 5192.776 kb on - strand, within Pf1N1B4_4699 at 5192.844 kb on - strand, within Pf1N1B4_4699 at 5193.261 kb on - strand, within Pf1N1B4_4699
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.006 mg/ml remove 5,190,726 + Pf1N1B4_4697 0.71 +1.1 5,190,727 - Pf1N1B4_4697 0.71 +1.6 5,190,727 - Pf1N1B4_4697 0.71 -0.4 5,190,734 + Pf1N1B4_4697 0.71 +1.0 5,190,852 + Pf1N1B4_4697 0.76 +0.3 5,190,852 + Pf1N1B4_4697 0.76 +0.4 5,191,032 - Pf1N1B4_4697 0.83 -0.4 5,191,155 - Pf1N1B4_4697 0.89 -1.7 5,191,155 - +2.2 5,191,243 + -0.4 5,191,426 + +0.5 5,191,426 + +0.8 5,191,426 + +0.1 5,191,426 + -0.4 5,191,426 + -0.4 5,191,430 + -0.7 5,191,431 - +2.2 5,191,691 + Pf1N1B4_4698 0.24 +1.9 5,191,692 - Pf1N1B4_4698 0.24 +0.3 5,191,728 + Pf1N1B4_4698 0.28 -1.0 5,191,730 + Pf1N1B4_4698 0.28 -2.0 5,191,731 - +0.6 5,191,731 - Pf1N1B4_4698 0.28 +1.0 5,191,731 - Pf1N1B4_4698 0.28 +1.0 5,191,811 + Pf1N1B4_4698 0.35 +1.9 5,192,082 - Pf1N1B4_4698 0.61 +2.2 5,192,082 - Pf1N1B4_4698 0.61 +1.5 5,192,105 + Pf1N1B4_4698 0.63 -0.8 5,192,105 + Pf1N1B4_4698 0.63 -0.3 5,192,106 - Pf1N1B4_4698 0.63 +1.5 5,192,106 - Pf1N1B4_4698 0.63 -0.6 5,192,157 - Pf1N1B4_4698 0.68 -1.0 5,192,552 - +1.6 5,192,573 - -2.0 5,192,776 - Pf1N1B4_4699 0.15 +3.2 5,192,844 - Pf1N1B4_4699 0.21 +1.4 5,193,261 - Pf1N1B4_4699 0.55 -1.6
Or see this region's nucleotide sequence