Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16795

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16785 and AO353_16790 are separated by 18 nucleotidesAO353_16790 and AO353_16795 overlap by 19 nucleotidesAO353_16795 and AO353_16800 are separated by 82 nucleotidesAO353_16800 and AO353_16805 are separated by 83 nucleotides AO353_16785: AO353_16785 - hypothetical protein, at 3,718,797 to 3,719,810 _16785 AO353_16790: AO353_16790 - lysozyme, at 3,719,829 to 3,720,392 _16790 AO353_16795: AO353_16795 - lysozyme, at 3,720,374 to 3,720,910 _16795 AO353_16800: AO353_16800 - damage-inducible protein CinA, at 3,720,993 to 3,721,493 _16800 AO353_16805: AO353_16805 - recombinase RecA, at 3,721,577 to 3,722,629 _16805 Position (kb) 3720 3721Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3719.414 kb on + strand, within AO353_16785at 3719.471 kb on + strand, within AO353_16785at 3719.471 kb on + strand, within AO353_16785at 3719.471 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.477 kb on + strand, within AO353_16785at 3719.478 kb on - strand, within AO353_16785at 3719.478 kb on - strand, within AO353_16785at 3719.478 kb on - strand, within AO353_16785at 3719.478 kb on - strand, within AO353_16785at 3719.478 kb on - strand, within AO353_16785at 3719.484 kb on - strand, within AO353_16785at 3719.562 kb on + strand, within AO353_16785at 3719.563 kb on - strand, within AO353_16785at 3719.563 kb on - strand, within AO353_16785at 3719.563 kb on - strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.622 kb on + strand, within AO353_16785at 3719.623 kb on - strand, within AO353_16785at 3719.623 kb on - strand, within AO353_16785at 3719.623 kb on - strand, within AO353_16785at 3719.623 kb on - strand, within AO353_16785at 3719.624 kb on + strand, within AO353_16785at 3719.708 kb on - strand, within AO353_16785at 3719.708 kb on - strand, within AO353_16785at 3719.738 kb on + strandat 3719.793 kb on + strandat 3719.793 kb on + strandat 3719.793 kb on + strandat 3719.793 kb on + strandat 3719.794 kb on - strandat 3719.794 kb on - strandat 3719.794 kb on - strandat 3719.794 kb on - strandat 3719.794 kb on - strandat 3719.805 kb on + strandat 3719.805 kb on + strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.806 kb on - strandat 3719.808 kb on + strandat 3719.808 kb on + strandat 3719.808 kb on + strandat 3719.808 kb on + strandat 3719.808 kb on + strandat 3719.809 kb on - strandat 3719.809 kb on - strandat 3719.809 kb on - strandat 3719.809 kb on - strandat 3719.815 kb on + strandat 3719.815 kb on + strandat 3719.815 kb on + strandat 3719.815 kb on + strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.816 kb on - strandat 3719.828 kb on + strandat 3719.828 kb on + strandat 3719.829 kb on - strandat 3719.829 kb on - strandat 3719.829 kb on - strandat 3719.837 kb on + strandat 3719.837 kb on + strandat 3719.837 kb on + strandat 3719.838 kb on - strandat 3719.838 kb on - strandat 3719.838 kb on - strandat 3719.838 kb on - strandat 3719.838 kb on - strandat 3719.838 kb on - strandat 3719.860 kb on + strandat 3719.861 kb on - strandat 3719.861 kb on - strandat 3719.997 kb on + strand, within AO353_16790at 3719.997 kb on + strand, within AO353_16790at 3719.997 kb on + strand, within AO353_16790at 3720.024 kb on + strand, within AO353_16790at 3720.024 kb on + strand, within AO353_16790at 3720.024 kb on + strand, within AO353_16790at 3720.024 kb on + strand, within AO353_16790at 3720.025 kb on - strand, within AO353_16790at 3720.025 kb on - strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.036 kb on + strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.037 kb on - strand, within AO353_16790at 3720.071 kb on + strand, within AO353_16790at 3720.072 kb on - strand, within AO353_16790at 3720.072 kb on - strand, within AO353_16790at 3720.072 kb on - strand, within AO353_16790at 3720.140 kb on + strand, within AO353_16790at 3720.144 kb on + strand, within AO353_16790at 3720.144 kb on + strand, within AO353_16790at 3720.144 kb on + strand, within AO353_16790at 3720.144 kb on + strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.145 kb on - strand, within AO353_16790at 3720.373 kb on + strandat 3720.426 kb on + strandat 3720.426 kb on + strandat 3720.629 kb on + strand, within AO353_16795at 3720.629 kb on + strand, within AO353_16795at 3720.629 kb on + strand, within AO353_16795at 3720.630 kb on - strand, within AO353_16795at 3720.630 kb on - strand, within AO353_16795at 3720.630 kb on - strand, within AO353_16795at 3720.630 kb on - strand, within AO353_16795at 3720.630 kb on - strand, within AO353_16795at 3720.792 kb on + strand, within AO353_16795at 3720.792 kb on + strand, within AO353_16795at 3720.793 kb on - strand, within AO353_16795at 3720.793 kb on - strand, within AO353_16795at 3720.887 kb on + strandat 3720.887 kb on + strandat 3720.887 kb on + strandat 3720.887 kb on + strandat 3720.888 kb on - strandat 3720.888 kb on - strandat 3720.888 kb on - strandat 3720.954 kb on + strandat 3720.954 kb on + strandat 3720.954 kb on + strandat 3720.955 kb on - strandat 3720.955 kb on - strandat 3720.955 kb on - strandat 3720.981 kb on + strandat 3720.982 kb on - strandat 3720.982 kb on - strandat 3720.982 kb on - strandat 3721.025 kb on - strandat 3721.025 kb on - strandat 3721.143 kb on + strand, within AO353_16800at 3721.143 kb on + strand, within AO353_16800at 3721.143 kb on + strand, within AO353_16800at 3721.143 kb on + strand, within AO353_16800at 3721.144 kb on - strand, within AO353_16800at 3721.144 kb on - strand, within AO353_16800at 3721.144 kb on - strand, within AO353_16800at 3721.152 kb on + strand, within AO353_16800at 3721.152 kb on + strand, within AO353_16800at 3721.153 kb on - strand, within AO353_16800at 3721.153 kb on - strand, within AO353_16800at 3721.153 kb on - strand, within AO353_16800at 3721.153 kb on - strand, within AO353_16800at 3721.153 kb on - strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.246 kb on + strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.247 kb on - strand, within AO353_16800at 3721.320 kb on - strand, within AO353_16800at 3721.320 kb on - strand, within AO353_16800at 3721.320 kb on - strand, within AO353_16800at 3721.377 kb on + strand, within AO353_16800at 3721.377 kb on + strand, within AO353_16800at 3721.378 kb on - strand, within AO353_16800at 3721.461 kb on + strandat 3721.461 kb on + strandat 3721.461 kb on + strandat 3721.461 kb on + strandat 3721.461 kb on + strandat 3721.461 kb on + strandat 3721.462 kb on - strandat 3721.462 kb on - strandat 3721.462 kb on - strandat 3721.462 kb on - strandat 3721.463 kb on + strandat 3721.463 kb on + strandat 3721.463 kb on + strandat 3721.464 kb on - strandat 3721.464 kb on - strandat 3721.464 kb on - strandat 3721.530 kb on + strandat 3721.555 kb on + strandat 3721.562 kb on + strandat 3721.562 kb on + strandat 3721.562 kb on + strandat 3721.562 kb on + strandat 3721.575 kb on + strandat 3721.658 kb on - strandat 3721.658 kb on - strandat 3721.767 kb on - strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.880 kb on + strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805at 3721.881 kb on - strand, within AO353_16805

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,719,414 + AO353_16785 0.61 -0.1
3,719,471 + AO353_16785 0.66 +1.0
3,719,471 + AO353_16785 0.66 -1.7
3,719,471 + AO353_16785 0.66 -0.7
3,719,477 + AO353_16785 0.67 -1.4
3,719,477 + AO353_16785 0.67 -0.7
3,719,477 + AO353_16785 0.67 +1.2
3,719,477 + AO353_16785 0.67 -0.5
3,719,477 + AO353_16785 0.67 -0.1
3,719,477 + AO353_16785 0.67 +0.0
3,719,478 - AO353_16785 0.67 +0.8
3,719,478 - AO353_16785 0.67 -0.5
3,719,478 - AO353_16785 0.67 +1.2
3,719,478 - AO353_16785 0.67 +1.3
3,719,478 - AO353_16785 0.67 -0.5
3,719,484 - AO353_16785 0.68 -0.1
3,719,562 + AO353_16785 0.75 -0.5
3,719,563 - AO353_16785 0.76 -0.3
3,719,563 - AO353_16785 0.76 -0.7
3,719,563 - AO353_16785 0.76 +0.7
3,719,622 + AO353_16785 0.81 -0.0
3,719,622 + AO353_16785 0.81 +0.4
3,719,622 + AO353_16785 0.81 -0.1
3,719,622 + AO353_16785 0.81 -0.9
3,719,622 + AO353_16785 0.81 -2.9
3,719,622 + AO353_16785 0.81 -0.8
3,719,623 - AO353_16785 0.81 -0.1
3,719,623 - AO353_16785 0.81 -0.0
3,719,623 - AO353_16785 0.81 +0.0
3,719,623 - AO353_16785 0.81 -0.4
3,719,624 + AO353_16785 0.82 -0.1
3,719,708 - AO353_16785 0.90 +0.1
3,719,708 - AO353_16785 0.90 +0.5
3,719,738 + +0.4
3,719,793 + -0.2
3,719,793 + +2.8
3,719,793 + +0.3
3,719,793 + -2.2
3,719,794 - +0.2
3,719,794 - +2.2
3,719,794 - +0.1
3,719,794 - +0.8
3,719,794 - +0.8
3,719,805 + +1.5
3,719,805 + +1.5
3,719,806 - +0.2
3,719,806 - +0.2
3,719,806 - +1.5
3,719,806 - +0.0
3,719,806 - +0.8
3,719,806 - -0.7
3,719,806 - -0.3
3,719,808 + +0.6
3,719,808 + -0.7
3,719,808 + +0.5
3,719,808 + -1.9
3,719,808 + -1.8
3,719,809 - -1.1
3,719,809 - -1.1
3,719,809 - +0.7
3,719,809 - -0.1
3,719,815 + -1.0
3,719,815 + +0.7
3,719,815 + +0.7
3,719,815 + +0.5
3,719,816 - -0.3
3,719,816 - +0.1
3,719,816 - +1.5
3,719,816 - +0.8
3,719,816 - +0.5
3,719,816 - -0.5
3,719,816 - -0.6
3,719,816 - +0.3
3,719,816 - -0.8
3,719,828 + +1.1
3,719,828 + -0.3
3,719,829 - -1.8
3,719,829 - +1.5
3,719,829 - -0.5
3,719,837 + +1.5
3,719,837 + -0.2
3,719,837 + +0.1
3,719,838 - -0.5
3,719,838 - +0.2
3,719,838 - +0.7
3,719,838 - +1.5
3,719,838 - +0.3
3,719,838 - -0.4
3,719,860 + +0.1
3,719,861 - -0.4
3,719,861 - +0.2
3,719,997 + AO353_16790 0.30 +0.1
3,719,997 + AO353_16790 0.30 -1.0
3,719,997 + AO353_16790 0.30 +1.5
3,720,024 + AO353_16790 0.35 +0.9
3,720,024 + AO353_16790 0.35 +0.8
3,720,024 + AO353_16790 0.35 +0.4
3,720,024 + AO353_16790 0.35 -0.3
3,720,025 - AO353_16790 0.35 -0.8
3,720,025 - AO353_16790 0.35 -0.9
3,720,036 + AO353_16790 0.37 +1.2
3,720,036 + AO353_16790 0.37 -0.5
3,720,036 + AO353_16790 0.37 +0.3
3,720,036 + AO353_16790 0.37 -0.3
3,720,036 + AO353_16790 0.37 +0.6
3,720,036 + AO353_16790 0.37 +0.3
3,720,036 + AO353_16790 0.37 -0.7
3,720,036 + AO353_16790 0.37 -2.3
3,720,037 - AO353_16790 0.37 -0.5
3,720,037 - AO353_16790 0.37 +0.3
3,720,037 - AO353_16790 0.37 -0.6
3,720,037 - AO353_16790 0.37 +0.9
3,720,037 - AO353_16790 0.37 -1.8
3,720,037 - AO353_16790 0.37 +0.6
3,720,037 - AO353_16790 0.37 +0.5
3,720,037 - AO353_16790 0.37 +0.4
3,720,071 + AO353_16790 0.43 +1.1
3,720,072 - AO353_16790 0.43 -0.5
3,720,072 - AO353_16790 0.43 -0.9
3,720,072 - AO353_16790 0.43 -0.6
3,720,140 + AO353_16790 0.55 -0.1
3,720,144 + AO353_16790 0.56 +0.8
3,720,144 + AO353_16790 0.56 +1.5
3,720,144 + AO353_16790 0.56 +0.8
3,720,144 + AO353_16790 0.56 +1.2
3,720,145 - AO353_16790 0.56 -0.8
3,720,145 - AO353_16790 0.56 -0.3
3,720,145 - AO353_16790 0.56 -0.7
3,720,145 - AO353_16790 0.56 -2.0
3,720,145 - AO353_16790 0.56 -0.1
3,720,145 - AO353_16790 0.56 -0.8
3,720,373 + -1.3
3,720,426 + -0.2
3,720,426 + +0.3
3,720,629 + AO353_16795 0.47 -0.1
3,720,629 + AO353_16795 0.47 +0.6
3,720,629 + AO353_16795 0.47 -2.0
3,720,630 - AO353_16795 0.48 +1.2
3,720,630 - AO353_16795 0.48 +0.5
3,720,630 - AO353_16795 0.48 +0.0
3,720,630 - AO353_16795 0.48 +0.5
3,720,630 - AO353_16795 0.48 +1.9
3,720,792 + AO353_16795 0.78 +0.4
3,720,792 + AO353_16795 0.78 -0.6
3,720,793 - AO353_16795 0.78 +1.7
3,720,793 - AO353_16795 0.78 +0.1
3,720,887 + +0.4
3,720,887 + -0.8
3,720,887 + -1.1
3,720,887 + -0.4
3,720,888 - +0.9
3,720,888 - -0.2
3,720,888 - +0.1
3,720,954 + +0.8
3,720,954 + -0.6
3,720,954 + -0.1
3,720,955 - -1.4
3,720,955 - -1.7
3,720,955 - +1.2
3,720,981 + -2.6
3,720,982 - +0.9
3,720,982 - -0.4
3,720,982 - +1.1
3,721,025 - -1.5
3,721,025 - +0.2
3,721,143 + AO353_16800 0.30 -0.6
3,721,143 + AO353_16800 0.30 -0.4
3,721,143 + AO353_16800 0.30 +0.3
3,721,143 + AO353_16800 0.30 -0.3
3,721,144 - AO353_16800 0.30 +1.5
3,721,144 - AO353_16800 0.30 +0.9
3,721,144 - AO353_16800 0.30 +0.1
3,721,152 + AO353_16800 0.32 +0.5
3,721,152 + AO353_16800 0.32 -0.1
3,721,153 - AO353_16800 0.32 -0.4
3,721,153 - AO353_16800 0.32 +0.4
3,721,153 - AO353_16800 0.32 -0.1
3,721,153 - AO353_16800 0.32 +0.5
3,721,153 - AO353_16800 0.32 +0.6
3,721,246 + AO353_16800 0.50 -0.7
3,721,246 + AO353_16800 0.50 -1.1
3,721,246 + AO353_16800 0.50 -0.3
3,721,246 + AO353_16800 0.50 -0.2
3,721,246 + AO353_16800 0.50 -0.4
3,721,246 + AO353_16800 0.50 -0.4
3,721,246 + AO353_16800 0.50 -0.8
3,721,246 + AO353_16800 0.50 +0.6
3,721,247 - AO353_16800 0.51 -0.1
3,721,247 - AO353_16800 0.51 -0.2
3,721,247 - AO353_16800 0.51 +0.2
3,721,247 - AO353_16800 0.51 +1.2
3,721,247 - AO353_16800 0.51 -0.1
3,721,247 - AO353_16800 0.51 -0.9
3,721,247 - AO353_16800 0.51 -0.4
3,721,247 - AO353_16800 0.51 -1.4
3,721,247 - AO353_16800 0.51 +0.5
3,721,247 - AO353_16800 0.51 -1.6
3,721,320 - AO353_16800 0.65 -0.2
3,721,320 - AO353_16800 0.65 -0.3
3,721,320 - AO353_16800 0.65 -0.2
3,721,377 + AO353_16800 0.77 -1.4
3,721,377 + AO353_16800 0.77 -0.5
3,721,378 - AO353_16800 0.77 +0.1
3,721,461 + -0.2
3,721,461 + +1.0
3,721,461 + -0.8
3,721,461 + +1.2
3,721,461 + -1.2
3,721,461 + -0.5
3,721,462 - +0.4
3,721,462 - -0.3
3,721,462 - +0.2
3,721,462 - -0.5
3,721,463 + -0.5
3,721,463 + -1.5
3,721,463 + -0.4
3,721,464 - +0.0
3,721,464 - +0.5
3,721,464 - -1.6
3,721,530 + +0.8
3,721,555 + +0.9
3,721,562 + -0.3
3,721,562 + -0.5
3,721,562 + +1.0
3,721,562 + +0.3
3,721,575 + -1.0
3,721,658 - -0.4
3,721,658 - -1.1
3,721,767 - AO353_16805 0.18 +0.1
3,721,880 + AO353_16805 0.29 -0.8
3,721,880 + AO353_16805 0.29 +0.5
3,721,880 + AO353_16805 0.29 -0.5
3,721,880 + AO353_16805 0.29 -0.4
3,721,881 - AO353_16805 0.29 +0.5
3,721,881 - AO353_16805 0.29 -1.5
3,721,881 - AO353_16805 0.29 -0.2
3,721,881 - AO353_16805 0.29 +0.5

Or see this region's nucleotide sequence