Strain Fitness in Pseudomonas sp. RS175 around PFR28_00960

Experiment: Citric Acid (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C) 10 mM
1,042,852	+		PFR28_00958	0.11	-0.5
1,042,853	-		PFR28_00958	0.11	-0.1
1,042,873	+		PFR28_00958	0.14	+0.0
1,042,873	+		PFR28_00958	0.14	-0.2
1,042,876	+		PFR28_00958	0.15	-0.3
1,042,877	-		PFR28_00958	0.15	+0.1
1,042,960	+		PFR28_00958	0.29	-0.0
1,042,960	+		PFR28_00958	0.29	+0.3
1,042,961	-		PFR28_00958	0.29	-0.4
1,042,961	-		PFR28_00958	0.29	-0.1
1,043,038	+		PFR28_00958	0.41	-0.0
1,043,193	-		PFR28_00958	0.67	-0.6
1,043,204	+		PFR28_00958	0.69	+0.0
1,043,205	-		PFR28_00958	0.69	+0.8
1,043,205	-		PFR28_00958	0.69	+0.1
1,043,228	+		PFR28_00958	0.73	-0.1
1,043,228	+		PFR28_00958	0.73	+0.3
1,043,229	-		PFR28_00958	0.73	-0.1
1,043,229	-		PFR28_00958	0.73	-0.2
1,043,229	-		PFR28_00958	0.73	-0.3
1,043,401	+				+1.5
1,043,402	-				+0.8
1,043,480	-		PFR28_00959	0.11	+1.0
1,043,669	+		PFR28_00959	0.75	-0.2
1,043,764	-				+0.5
1,043,778	+				-1.2
1,043,778	+				+0.3
1,043,779	-				+0.2
1,043,779	-				+0.4
1,043,779	-				-0.4
1,043,779	-				+0.2
1,043,779	-				-0.2
1,043,779	-				+0.3
1,043,779	-				-1.3
1,043,779	-				-0.1
1,043,796	-				-0.5
1,043,881	+				-0.5
1,043,881	+				-0.3
1,043,882	-				-0.5
1,043,969	+		PFR28_00960	0.15	-0.6
1,043,969	+		PFR28_00960	0.15	-0.3
1,043,969	+		PFR28_00960	0.15	-0.6
1,043,969	+		PFR28_00960	0.15	-0.2
1,043,969	+		PFR28_00960	0.15	-0.6
1,043,969	+		PFR28_00960	0.15	-0.6
1,043,970	-		PFR28_00960	0.15	-0.2
1,043,970	-		PFR28_00960	0.15	-0.7
1,043,970	-		PFR28_00960	0.15	-0.4
1,043,970	-		PFR28_00960	0.15	+0.4
1,043,970	-		PFR28_00960	0.15	+0.1
1,044,002	+		PFR28_00960	0.18	-0.3
1,044,002	+		PFR28_00960	0.18	-0.2
1,044,002	+		PFR28_00960	0.18	-1.2
1,044,002	+		PFR28_00960	0.18	-0.7
1,044,002	+		PFR28_00960	0.18	-0.9
1,044,002	+		PFR28_00960	0.18	-0.8
1,044,002	+		PFR28_00960	0.18	-0.2
1,044,002	+		PFR28_00960	0.18	-0.8
1,044,003	-		PFR28_00960	0.18	-1.1
1,044,003	-		PFR28_00960	0.18	-0.7
1,044,003	-		PFR28_00960	0.18	-1.0
1,044,003	-		PFR28_00960	0.18	-1.1
1,044,003	-		PFR28_00960	0.18	+0.5
1,044,003	-		PFR28_00960	0.18	+1.1
1,044,003	-		PFR28_00960	0.18	-0.7
1,044,003	-		PFR28_00960	0.18	-0.7
1,044,003	-		PFR28_00960	0.18	-1.3
1,044,003	-		PFR28_00960	0.18	-0.9
1,044,003	-		PFR28_00960	0.18	-0.3
1,044,014	+		PFR28_00960	0.19	-0.7
1,044,015	-		PFR28_00960	0.19	-0.8
1,044,015	-		PFR28_00960	0.19	-0.2
1,044,155	+		PFR28_00960	0.34	-0.9
1,044,155	+		PFR28_00960	0.34	-1.3
1,044,156	-		PFR28_00960	0.34	-0.5
1,044,156	-		PFR28_00960	0.34	-0.4
1,044,156	-		PFR28_00960	0.34	-0.3
1,044,156	-		PFR28_00960	0.34	-0.4
1,044,156	-		PFR28_00960	0.34	-0.4
1,044,156	-		PFR28_00960	0.34	-1.3
1,044,156	-		PFR28_00960	0.34	-1.6
1,044,156	-		PFR28_00960	0.34	-0.4
1,044,158	+		PFR28_00960	0.34	-0.3
1,044,158	+		PFR28_00960	0.34	-0.7
1,044,158	+		PFR28_00960	0.34	-0.4
1,044,158	+		PFR28_00960	0.34	-0.8
1,044,158	+		PFR28_00960	0.34	-1.0
1,044,158	+		PFR28_00960	0.34	-1.0
1,044,158	+		PFR28_00960	0.34	-0.5
1,044,158	+		PFR28_00960	0.34	-0.5
1,044,158	+		PFR28_00960	0.34	-0.0
1,044,158	+		PFR28_00960	0.34	-1.2
1,044,158	+		PFR28_00960	0.34	-1.5
1,044,158	+		PFR28_00960	0.34	+0.2
1,044,158	+		PFR28_00960	0.34	-0.8
1,044,158	+		PFR28_00960	0.34	-0.6
1,044,158	+		PFR28_00960	0.34	-1.3
1,044,158	+		PFR28_00960	0.34	-0.9
1,044,159	-		PFR28_00960	0.34	-0.4
1,044,159	-		PFR28_00960	0.34	-1.4
1,044,159	-		PFR28_00960	0.34	-0.7
1,044,159	-		PFR28_00960	0.34	-1.3
1,044,159	-		PFR28_00960	0.34	-0.3
1,044,159	-		PFR28_00960	0.34	-0.6
1,044,161	+		PFR28_00960	0.34	-0.4
1,044,185	+		PFR28_00960	0.37	-1.1
1,044,185	+		PFR28_00960	0.37	-0.2
1,044,185	+		PFR28_00960	0.37	-1.2
1,044,186	-		PFR28_00960	0.37	-0.7
1,044,186	-		PFR28_00960	0.37	-0.9
1,044,186	-		PFR28_00960	0.37	-0.6
1,044,186	-		PFR28_00960	0.37	-1.0
1,044,186	-		PFR28_00960	0.37	-1.2
1,044,186	-		PFR28_00960	0.37	-0.2
1,044,520	+		PFR28_00960	0.71	-0.4
1,044,520	+		PFR28_00960	0.71	-0.4
1,044,521	-		PFR28_00960	0.71	-0.9
1,044,521	-		PFR28_00960	0.71	-0.7
1,044,536	+		PFR28_00960	0.73	-0.1
1,044,536	+		PFR28_00960	0.73	+0.1
1,044,536	+		PFR28_00960	0.73	-0.6
1,044,537	-		PFR28_00960	0.73	-0.0
1,044,537	-		PFR28_00960	0.73	-0.6
1,044,537	-		PFR28_00960	0.73	-0.3
1,044,537	-		PFR28_00960	0.73	+0.0
1,044,566	+		PFR28_00960	0.76	-0.7
1,044,691	+		PFR28_00960	0.89	-0.7
1,044,691	+		PFR28_00960	0.89	-0.7
1,044,797	+				-0.4
1,044,798	-				-0.8
1,044,798	-				-0.9
1,044,923	+				-1.6
1,044,923	+				-1.5
1,044,923	+				-1.6
1,044,923	+				-1.8
1,044,923	+				-1.6
1,044,923	+				-1.6
1,044,923	+				-1.0
1,044,923	+				-1.5
1,044,924	-				-1.6
1,044,924	-				-1.2
1,044,924	-				-1.3
1,044,924	-				-1.2
1,044,924	-				-1.7
1,044,924	-				-1.2
1,044,924	-				-1.4
1,044,924	-				-0.8
1,044,924	-				-1.9
1,044,924	-				-1.1
1,044,924	-				-1.6
1,044,926	+				-1.2
1,044,926	+				-1.2
1,044,926	+				-1.0
1,044,926	+				-0.9
1,044,926	+				-1.4
1,044,926	+				-1.0
1,044,926	+				-2.1
1,044,926	+				-1.6
1,044,927	-				-1.2
1,044,927	-				-2.0
1,044,927	-				-0.8
1,044,927	-				-1.3
1,044,927	-				-1.2
1,044,927	-				-1.3
1,044,927	-				-1.2
1,045,027	-				-1.3
1,045,027	-				-1.5
1,045,027	-				-1.1
1,045,031	+				-1.6
1,045,031	+				-0.7
1,045,032	-				-1.4
1,045,200	+				-0.8
1,045,201	-				-1.4
1,045,201	-				-1.5
1,045,201	-				-1.2
1,045,201	-				-1.2
1,045,203	+				-1.3
1,045,204	-				-1.4
1,045,204	-				-2.1
1,045,231	+				-1.3
1,045,240	+				-1.8
1,045,240	+				-1.9
1,045,241	-				-1.4
1,045,241	-				-1.7
1,045,241	-				-1.3
1,045,241	-				-1.1
1,045,241	-				-1.2
1,045,244	+				-1.9
1,045,244	+				-1.4
1,045,244	+				-1.1
1,045,244	+				-1.9
1,045,244	+				-1.5
1,045,244	+				-1.6
1,045,244	+				-2.0
1,045,244	+				-1.2
1,045,244	+				-1.6
1,045,244	+				-1.0
1,045,244	+				-1.0
1,045,244	+				-1.0
1,045,244	+				-0.9
1,045,244	+				-1.1
1,045,244	+				-1.6
1,045,244	+				-1.7
1,045,245	-				-1.3
1,045,245	-				-0.9
1,045,245	-				-1.3
1,045,245	-				-1.4
1,045,245	-				-1.5
1,045,245	-				-1.4
1,045,245	-				-1.1
1,045,245	-				-1.6
1,045,245	-				-1.1
1,045,245	-				-1.6
1,045,245	-				-1.4
1,045,245	-				-1.7
1,045,247	+				-1.0
1,045,248	-				-1.5
1,045,254	+				-1.1
1,045,254	+				-1.1
1,045,255	-				-0.9
1,045,260	+				-1.4
1,045,260	+				-1.4
1,045,261	-				-1.0
1,045,261	-				-0.7
1,045,263	+				-0.8
1,045,264	-				-1.3
1,045,264	-				-1.2
1,045,267	+				-1.3
1,045,268	-				-1.1
1,045,300	+				-1.0
1,045,492	+				-0.7
1,045,492	+				-0.4
1,045,492	+				-0.0
1,045,513	+				-1.2
1,045,514	-				-0.2
1,045,560	+				-1.5
1,045,560	+				-1.0
1,045,560	+				-1.2
1,045,668	+				-1.5
1,045,668	+				-0.4
1,045,668	+				-1.5
1,045,668	+				-1.9
1,045,669	-				-0.9
1,045,669	-				+1.4
1,045,671	+				-1.5
1,045,671	+				-0.1
1,045,671	+				-3.4
1,045,671	+				-0.4
1,045,671	+				-2.1
1,045,671	+				-0.4
1,045,671	+				-1.3
1,045,671	+				-2.0
1,045,671	+				-0.9
1,045,671	+				-1.2
1,045,671	+				-0.8
1,045,671	+				-1.1
1,045,671	+				-0.9
1,045,671	+				-0.5
1,045,672	-				+0.7
1,045,672	-				+0.7
1,045,672	-				+0.2
1,045,672	-				+0.6
1,045,672	-				-0.7
1,045,672	-				-0.8
1,045,672	-				+0.1
1,045,672	-				-1.8
1,045,672	-				-0.2
1,045,672	-				+0.2
1,045,710	-				+0.8
1,045,743	+				-0.9
1,045,743	+				-1.1
1,045,743	+				+0.0
1,045,743	+				-0.7
1,045,743	+				-1.2
1,045,743	+				-0.6
1,045,743	+				-0.6
1,045,743	+				-0.3
1,045,743	+				+0.7
1,045,743	+				+0.1
1,045,743	+				-0.6
1,045,743	+				-0.4
1,045,743	+				-0.8
1,045,744	-				+0.5
1,045,744	-				-0.9
1,045,744	-				-0.1
1,045,744	-				-1.4
1,045,744	-				+0.7
1,045,772	+				-1.1
1,045,773	-				+0.5
1,045,777	+				-0.4
1,045,777	+				-1.0
1,045,778	-				+0.4
1,045,778	-				+0.3