Strain Fitness in Pseudomonas sp. RS175 around PFR28_00194

Experiment: Citric Acid (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00193 and PFR28_00194 are separated by 9 nucleotidesPFR28_00194 and PFR28_00195 are separated by 201 nucleotides PFR28_00193: PFR28_00193 - Sulfate adenylyltransferase subunit 2, at 216,847 to 217,764 _00193 PFR28_00194: PFR28_00194 - Bifunctional enzyme CysN/CysC, at 217,774 to 219,672 _00194 PFR28_00195: PFR28_00195 - putative acyltransferase YihG, at 219,874 to 220,782 _00195 Position (kb) 217 218 219 220Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 216.786 kb on + strandat 216.786 kb on + strandat 216.786 kb on + strandat 216.786 kb on + strandat 216.787 kb on - strandat 216.824 kb on + strandat 216.824 kb on + strandat 216.824 kb on + strandat 216.843 kb on - strandat 216.843 kb on - strandat 216.943 kb on + strand, within PFR28_00193at 216.943 kb on + strand, within PFR28_00193at 216.944 kb on - strand, within PFR28_00193at 216.944 kb on - strand, within PFR28_00193at 217.060 kb on + strand, within PFR28_00193at 217.060 kb on + strand, within PFR28_00193at 217.060 kb on + strand, within PFR28_00193at 217.061 kb on - strand, within PFR28_00193at 217.061 kb on - strand, within PFR28_00193at 217.061 kb on - strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.219 kb on + strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.220 kb on - strand, within PFR28_00193at 217.355 kb on - strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.432 kb on + strand, within PFR28_00193at 217.433 kb on - strand, within PFR28_00193at 217.433 kb on - strand, within PFR28_00193at 217.433 kb on - strand, within PFR28_00193at 217.433 kb on - strand, within PFR28_00193at 217.433 kb on - strand, within PFR28_00193at 217.438 kb on + strand, within PFR28_00193at 217.438 kb on + strand, within PFR28_00193at 217.438 kb on + strand, within PFR28_00193at 217.438 kb on + strand, within PFR28_00193at 217.438 kb on + strand, within PFR28_00193at 217.439 kb on - strand, within PFR28_00193at 217.439 kb on - strand, within PFR28_00193at 217.468 kb on + strand, within PFR28_00193at 217.468 kb on + strand, within PFR28_00193at 217.757 kb on - strandat 217.763 kb on - strandat 217.816 kb on + strandat 217.817 kb on - strandat 217.927 kb on + strandat 217.927 kb on + strandat 217.927 kb on + strandat 217.928 kb on - strandat 217.990 kb on - strand, within PFR28_00194at 218.065 kb on + strand, within PFR28_00194at 218.066 kb on - strand, within PFR28_00194at 218.066 kb on - strand, within PFR28_00194at 218.122 kb on + strand, within PFR28_00194at 218.122 kb on + strand, within PFR28_00194at 218.122 kb on + strand, within PFR28_00194at 218.122 kb on + strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.123 kb on - strand, within PFR28_00194at 218.323 kb on + strand, within PFR28_00194at 218.323 kb on + strand, within PFR28_00194at 218.323 kb on + strand, within PFR28_00194at 218.323 kb on + strand, within PFR28_00194at 218.434 kb on + strand, within PFR28_00194at 218.435 kb on - strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.521 kb on + strand, within PFR28_00194at 218.522 kb on - strand, within PFR28_00194at 218.792 kb on + strand, within PFR28_00194at 218.792 kb on + strand, within PFR28_00194at 218.830 kb on + strand, within PFR28_00194at 218.831 kb on - strand, within PFR28_00194at 218.854 kb on + strand, within PFR28_00194at 218.854 kb on + strand, within PFR28_00194at 218.854 kb on + strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.855 kb on - strand, within PFR28_00194at 218.992 kb on + strand, within PFR28_00194at 219.472 kb on + strand, within PFR28_00194at 219.472 kb on + strand, within PFR28_00194at 219.473 kb on - strand, within PFR28_00194at 219.523 kb on + strandat 219.523 kb on + strandat 219.543 kb on + strandat 219.544 kb on - strandat 219.565 kb on + strandat 219.566 kb on - strandat 219.670 kb on + strandat 219.670 kb on + strandat 219.670 kb on + strandat 219.671 kb on - strandat 219.671 kb on - strandat 219.671 kb on - strandat 219.693 kb on + strandat 219.693 kb on + strandat 219.694 kb on - strandat 219.694 kb on - strandat 219.694 kb on - strandat 219.694 kb on - strandat 219.694 kb on - strandat 219.749 kb on - strandat 219.969 kb on - strand, within PFR28_00195at 219.986 kb on + strand, within PFR28_00195at 219.986 kb on + strand, within PFR28_00195at 219.987 kb on - strand, within PFR28_00195at 219.987 kb on - strand, within PFR28_00195at 220.012 kb on + strand, within PFR28_00195at 220.106 kb on - strand, within PFR28_00195at 220.106 kb on - strand, within PFR28_00195at 220.184 kb on + strand, within PFR28_00195at 220.466 kb on + strand, within PFR28_00195at 220.466 kb on + strand, within PFR28_00195at 220.466 kb on + strand, within PFR28_00195at 220.466 kb on + strand, within PFR28_00195at 220.467 kb on - strand, within PFR28_00195at 220.467 kb on - strand, within PFR28_00195at 220.467 kb on - strand, within PFR28_00195at 220.467 kb on - strand, within PFR28_00195at 220.518 kb on - strand, within PFR28_00195at 220.529 kb on + strand, within PFR28_00195at 220.530 kb on - strand, within PFR28_00195at 220.530 kb on - strand, within PFR28_00195

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C) 10 mM
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216,786 + +1.2
216,786 + -1.1
216,786 + -1.9
216,786 + +0.5
216,787 - -1.3
216,824 + +0.5
216,824 + -0.1
216,824 + -0.1
216,843 - -3.0
216,843 - -1.8
216,943 + PFR28_00193 0.10 -2.8
216,943 + PFR28_00193 0.10 +1.2
216,944 - PFR28_00193 0.11 -3.2
216,944 - PFR28_00193 0.11 -3.5
217,060 + PFR28_00193 0.23 -1.2
217,060 + PFR28_00193 0.23 -3.3
217,060 + PFR28_00193 0.23 -1.6
217,061 - PFR28_00193 0.23 -4.0
217,061 - PFR28_00193 0.23 -4.0
217,061 - PFR28_00193 0.23 -3.1
217,219 + PFR28_00193 0.41 -1.4
217,219 + PFR28_00193 0.41 -4.3
217,219 + PFR28_00193 0.41 -3.8
217,219 + PFR28_00193 0.41 -1.6
217,219 + PFR28_00193 0.41 -2.8
217,219 + PFR28_00193 0.41 -4.8
217,220 - PFR28_00193 0.41 -3.6
217,220 - PFR28_00193 0.41 -2.8
217,220 - PFR28_00193 0.41 -2.6
217,220 - PFR28_00193 0.41 -3.5
217,220 - PFR28_00193 0.41 -3.9
217,220 - PFR28_00193 0.41 -1.5
217,220 - PFR28_00193 0.41 -2.5
217,220 - PFR28_00193 0.41 -3.3
217,355 - PFR28_00193 0.55 -2.2
217,432 + PFR28_00193 0.64 -3.9
217,432 + PFR28_00193 0.64 -3.5
217,432 + PFR28_00193 0.64 -3.5
217,432 + PFR28_00193 0.64 -1.6
217,432 + PFR28_00193 0.64 -3.2
217,432 + PFR28_00193 0.64 -2.5
217,432 + PFR28_00193 0.64 -2.2
217,432 + PFR28_00193 0.64 -1.6
217,432 + PFR28_00193 0.64 -4.2
217,433 - PFR28_00193 0.64 -2.1
217,433 - PFR28_00193 0.64 -1.0
217,433 - PFR28_00193 0.64 -1.9
217,433 - PFR28_00193 0.64 -4.2
217,433 - PFR28_00193 0.64 -1.6
217,438 + PFR28_00193 0.64 -2.6
217,438 + PFR28_00193 0.64 -1.1
217,438 + PFR28_00193 0.64 -4.1
217,438 + PFR28_00193 0.64 -2.0
217,438 + PFR28_00193 0.64 -3.5
217,439 - PFR28_00193 0.64 -2.5
217,439 - PFR28_00193 0.64 -3.3
217,468 + PFR28_00193 0.68 -2.0
217,468 + PFR28_00193 0.68 -1.7
217,757 - -0.5
217,763 - -1.9
217,816 + -2.6
217,817 - -1.6
217,927 + -1.8
217,927 + -4.2
217,927 + -1.4
217,928 - -2.8
217,990 - PFR28_00194 0.11 -4.0
218,065 + PFR28_00194 0.15 -3.4
218,066 - PFR28_00194 0.15 -3.1
218,066 - PFR28_00194 0.15 -3.9
218,122 + PFR28_00194 0.18 -3.3
218,122 + PFR28_00194 0.18 -0.6
218,122 + PFR28_00194 0.18 -2.5
218,122 + PFR28_00194 0.18 -3.4
218,123 - PFR28_00194 0.18 -2.3
218,123 - PFR28_00194 0.18 -2.1
218,123 - PFR28_00194 0.18 -3.2
218,123 - PFR28_00194 0.18 +0.7
218,123 - PFR28_00194 0.18 -3.6
218,123 - PFR28_00194 0.18 -2.5
218,323 + PFR28_00194 0.29 -3.9
218,323 + PFR28_00194 0.29 -4.3
218,323 + PFR28_00194 0.29 -0.9
218,323 + PFR28_00194 0.29 -2.8
218,434 + PFR28_00194 0.35 -2.2
218,435 - PFR28_00194 0.35 -1.9
218,521 + PFR28_00194 0.39 -2.2
218,521 + PFR28_00194 0.39 -4.0
218,521 + PFR28_00194 0.39 -0.1
218,521 + PFR28_00194 0.39 -3.4
218,521 + PFR28_00194 0.39 -1.8
218,521 + PFR28_00194 0.39 -3.5
218,521 + PFR28_00194 0.39 -2.2
218,522 - PFR28_00194 0.39 -3.4
218,792 + PFR28_00194 0.54 -2.0
218,792 + PFR28_00194 0.54 -0.0
218,830 + PFR28_00194 0.56 -3.6
218,831 - PFR28_00194 0.56 +0.5
218,854 + PFR28_00194 0.57 -2.6
218,854 + PFR28_00194 0.57 -1.6
218,854 + PFR28_00194 0.57 -2.0
218,855 - PFR28_00194 0.57 -3.3
218,855 - PFR28_00194 0.57 -3.2
218,855 - PFR28_00194 0.57 -1.8
218,855 - PFR28_00194 0.57 -2.1
218,855 - PFR28_00194 0.57 -2.8
218,855 - PFR28_00194 0.57 -2.7
218,992 + PFR28_00194 0.64 -2.8
219,472 + PFR28_00194 0.89 -4.4
219,472 + PFR28_00194 0.89 -1.8
219,473 - PFR28_00194 0.89 -3.6
219,523 + -1.8
219,523 + -1.9
219,543 + -0.8
219,544 - -1.2
219,565 + -2.7
219,566 - -3.1
219,670 + +0.1
219,670 + +0.6
219,670 + -0.3
219,671 - +0.5
219,671 - -0.0
219,671 - +0.1
219,693 + -0.6
219,693 + -0.2
219,694 - -0.1
219,694 - +0.1
219,694 - +0.0
219,694 - +0.4
219,694 - +1.8
219,749 - +1.1
219,969 - PFR28_00195 0.10 +0.1
219,986 + PFR28_00195 0.12 -0.9
219,986 + PFR28_00195 0.12 +0.2
219,987 - PFR28_00195 0.12 +2.8
219,987 - PFR28_00195 0.12 -1.2
220,012 + PFR28_00195 0.15 +1.1
220,106 - PFR28_00195 0.26 +2.8
220,106 - PFR28_00195 0.26 -0.2
220,184 + PFR28_00195 0.34 -0.8
220,466 + PFR28_00195 0.65 -0.9
220,466 + PFR28_00195 0.65 -0.1
220,466 + PFR28_00195 0.65 -0.8
220,466 + PFR28_00195 0.65 +0.2
220,467 - PFR28_00195 0.65 +1.2
220,467 - PFR28_00195 0.65 +0.3
220,467 - PFR28_00195 0.65 +0.1
220,467 - PFR28_00195 0.65 -2.7
220,518 - PFR28_00195 0.71 -0.1
220,529 + PFR28_00195 0.72 +0.5
220,530 - PFR28_00195 0.72 -0.9
220,530 - PFR28_00195 0.72 -0.3

Or see this region's nucleotide sequence