Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12580

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
2,806,729	+		LRK54_RS12575	0.52	-1.5
2,806,729	+		LRK54_RS12575	0.52	+0.6
2,806,730	-		LRK54_RS12575	0.52	+0.9
2,806,730	-		LRK54_RS12575	0.52	-1.5
2,806,730	-		LRK54_RS12575	0.52	-1.7
2,806,730	-		LRK54_RS12575	0.52	-0.6
2,806,730	-		LRK54_RS12575	0.52	+1.0
2,806,748	+		LRK54_RS12575	0.53	-0.9
2,806,749	-		LRK54_RS12575	0.53	-0.5
2,806,752	+		LRK54_RS12575	0.54	+0.7
2,806,752	+		LRK54_RS12575	0.54	+0.5
2,806,752	+		LRK54_RS12575	0.54	+0.2
2,806,752	+		LRK54_RS12575	0.54	-0.5
2,806,752	+		LRK54_RS12575	0.54	-1.2
2,806,753	-		LRK54_RS12575	0.54	-0.7
2,806,753	-		LRK54_RS12575	0.54	-0.0
2,806,753	-		LRK54_RS12575	0.54	-0.0
2,806,753	-		LRK54_RS12575	0.54	-1.0
2,806,753	-		LRK54_RS12575	0.54	+0.6
2,806,770	+		LRK54_RS12575	0.55	-1.0
2,806,770	+		LRK54_RS12575	0.55	+1.0
2,806,771	-		LRK54_RS12575	0.55	-0.6
2,806,771	-		LRK54_RS12575	0.55	+0.2
2,806,771	-		LRK54_RS12575	0.55	-0.5
2,806,951	+		LRK54_RS12575	0.73	+0.3
2,806,951	+		LRK54_RS12575	0.73	-0.5
2,806,952	-		LRK54_RS12575	0.73	-1.9
2,806,970	+		LRK54_RS12575	0.74	-1.8
2,806,971	-		LRK54_RS12575	0.74	+0.8
2,807,127	-		LRK54_RS12575	0.89	+1.0
2,807,127	-		LRK54_RS12575	0.89	-0.9
2,807,128	+				+0.5
2,807,128	+		LRK54_RS12575	0.89	+0.2
2,807,128	+		LRK54_RS12575	0.89	-1.5
2,807,128	+		LRK54_RS12575	0.89	-0.4
2,807,128	+		LRK54_RS12575	0.89	+0.1
2,807,128	+		LRK54_RS12575	0.89	+0.6
2,807,128	+		LRK54_RS12575	0.89	-0.3
2,807,128	+		LRK54_RS12575	0.89	-0.5
2,807,129	-		LRK54_RS12575	0.89	-1.0
2,807,129	-		LRK54_RS12575	0.89	+0.9
2,807,129	-		LRK54_RS12575	0.89	-0.6
2,807,129	-		LRK54_RS12575	0.89	+0.5
2,807,129	-		LRK54_RS12575	0.89	-0.6
2,807,129	-		LRK54_RS12575	0.89	-1.8
2,807,129	-		LRK54_RS12575	0.89	-0.1
2,807,129	-		LRK54_RS12575	0.89	-0.2
2,807,129	-		LRK54_RS12575	0.89	-0.5
2,807,129	-		LRK54_RS12575	0.89	+0.6
2,807,228	-				+0.3
2,807,304	+				-0.6
2,807,304	+				+0.0
2,807,305	-				-0.0
2,807,305	-				-0.4
2,807,305	-				-1.1
2,807,307	+				-0.3
2,807,307	+				-1.2
2,807,307	+				-0.0
2,807,307	+				-0.6
2,807,307	+				-0.2
2,807,308	-				-0.0
2,807,308	-				+0.3
2,807,308	-				-1.0
2,807,310	+				+2.2
2,807,310	+				-0.5
2,807,310	+				+1.1
2,807,310	+				-0.5
2,807,310	+				+0.1
2,807,311	-				-0.4
2,807,313	+				-0.1
2,807,372	+				-2.3
2,807,373	-				-1.5
2,807,388	+				-1.0
2,807,407	-				+1.5
2,807,459	-		LRK54_RS12580	0.22	+1.5
2,807,470	+		LRK54_RS12580	0.25	-0.5
2,807,471	-		LRK54_RS12580	0.26	+0.1
2,807,510	-		LRK54_RS12580	0.38	-0.5
2,807,510	-		LRK54_RS12580	0.38	-0.9
2,807,519	-		LRK54_RS12580	0.40	-0.9
2,807,519	-		LRK54_RS12580	0.40	+0.5
2,807,645	-		LRK54_RS12580	0.79	-0.1
2,807,657	+		LRK54_RS12580	0.83	-0.1
2,807,658	-		LRK54_RS12580	0.83	-0.6
2,807,658	-		LRK54_RS12580	0.83	+0.2
2,807,658	-		LRK54_RS12580	0.83	-0.5
2,807,658	-		LRK54_RS12580	0.83	-2.4
2,807,700	+				-1.0
2,807,700	+				-1.0
2,807,701	-				-1.0
2,807,701	-				+0.9
2,807,765	+				-1.0
2,807,766	-				-0.9
2,807,766	-				+0.2
2,807,766	-				+2.5
2,807,766	-				-0.7
2,807,832	+				+0.5
2,807,832	+				+0.1
2,807,832	+				+0.1
2,807,832	+				+0.1
2,807,833	-				-0.4
2,807,833	-				-0.9
2,807,833	-				+0.5
2,807,833	-				+0.9
2,807,882	+				-0.7
2,807,883	-				-0.7
2,807,883	-				+0.4
2,807,974	+				-1.0
2,807,974	+				-0.0
2,807,975	-				-0.8
2,807,980	+				-0.4
2,807,981	-				+1.9
2,807,983	+				-0.4
2,807,984	-				+1.0
2,808,015	-				+1.5
2,808,017	-				+0.1
2,808,070	+				+2.0
2,808,070	+				-0.1
2,808,070	+				+0.2
2,808,070	+				+1.5
2,808,070	+				-1.1
2,808,070	+				+0.0
2,808,070	+				+0.3
2,808,070	+				+0.2
2,808,070	+				+0.6
2,808,070	+				-0.7
2,808,070	+				-1.2
2,808,070	+				-0.5
2,808,070	+				-0.4
2,808,070	+				-1.0
2,808,070	+				+1.2
2,808,070	+				-0.6
2,808,070	+				-0.0
2,808,071	-				-0.8
2,808,071	-				+0.4
2,808,071	-				-0.8
2,808,071	-				+0.4
2,808,071	-				+0.6
2,808,071	-				-0.1
2,808,071	-				-0.4
2,808,071	-				-0.5
2,808,071	-				-2.0
2,808,071	-				-0.0
2,808,071	-				-0.5
2,808,071	-				+0.6
2,808,071	-				+0.3
2,808,121	+				-0.2
2,808,121	+				+0.6
2,808,121	+				+0.1
2,808,122	-				+0.0
2,808,150	+				-0.7
2,808,151	-				-0.5
2,808,151	-				-1.5
2,808,151	-				-1.4
2,808,162	+				+0.5
2,808,162	+				-0.8
2,808,163	-				-0.1
2,808,163	-				-0.3
2,808,171	+				-2.5
2,808,171	+				-0.7
2,808,171	+				-1.1
2,808,171	+				-0.1
2,808,171	+				-0.7
2,808,171	+				-0.7
2,808,172	-				-0.9
2,808,172	-				+0.6
2,808,172	-				+0.6
2,808,172	-				-1.1
2,808,172	-				-2.1
2,808,184	+				-0.4
2,808,185	-				-0.4
2,808,185	-				+1.5
2,808,185	-				-1.7
2,808,248	+				-1.0
2,808,248	+				+0.2
2,808,249	-				+0.8
2,808,249	-				-0.4
2,808,277	+				+0.5
2,808,277	+				+0.5
2,808,278	-				+1.2
2,808,278	-				-0.7
2,808,278	-				-0.9
2,808,278	-				-1.2
2,808,278	-				+0.3
2,808,294	-				-0.5
2,808,324	+				-1.3
2,808,326	+				+0.9
2,808,326	+				-0.1
2,808,326	+				+0.2
2,808,326	+				-1.2
2,808,326	+				+0.2
2,808,326	+				-0.2
2,808,326	+				+0.5
2,808,326	+				-1.6
2,808,327	-				-1.5
2,808,327	-				-0.5
2,808,327	-				-0.9
2,808,327	-				+1.0
2,808,327	-				-0.6
2,808,327	-				-0.6
2,808,327	-				+4.5
2,808,327	-				+0.0
2,808,425	+		LRK54_RS12585	0.41	+0.6
2,808,425	+		LRK54_RS12585	0.41	-1.0
2,808,425	+		LRK54_RS12585	0.41	+0.1
2,808,425	+		LRK54_RS12585	0.41	-1.2
2,808,425	+		LRK54_RS12585	0.41	-1.0
2,808,425	+		LRK54_RS12585	0.41	+0.9
2,808,425	+		LRK54_RS12585	0.41	-2.0
2,808,426	-		LRK54_RS12585	0.42	+1.0
2,808,426	-		LRK54_RS12585	0.42	+1.2
2,808,426	-		LRK54_RS12585	0.42	-0.0
2,808,426	-		LRK54_RS12585	0.42	+0.1
2,808,426	-		LRK54_RS12585	0.42	+1.5
2,808,426	-		LRK54_RS12585	0.42	+0.3
2,808,426	-		LRK54_RS12585	0.42	-0.6
2,808,426	-		LRK54_RS12585	0.42	+0.5
2,808,427	+		LRK54_RS12585	0.42	+0.2
2,808,427	+		LRK54_RS12585	0.42	-0.5
2,808,427	+		LRK54_RS12585	0.42	-0.5
2,808,427	+		LRK54_RS12585	0.42	-0.1
2,808,427	+		LRK54_RS12585	0.42	-0.9
2,808,427	+		LRK54_RS12585	0.42	-0.5
2,808,427	+		LRK54_RS12585	0.42	-1.4
2,808,427	+		LRK54_RS12585	0.42	+0.7
2,808,427	+		LRK54_RS12585	0.42	+0.4
2,808,427	+		LRK54_RS12585	0.42	-0.4
2,808,427	+		LRK54_RS12585	0.42	-0.0
2,808,427	+		LRK54_RS12585	0.42	-1.9
2,808,427	+		LRK54_RS12585	0.42	-1.5
2,808,427	+		LRK54_RS12585	0.42	-1.2
2,808,427	+		LRK54_RS12585	0.42	-0.3
2,808,427	+		LRK54_RS12585	0.42	+0.6
2,808,427	+		LRK54_RS12585	0.42	+1.9
2,808,427	+		LRK54_RS12585	0.42	-1.5
2,808,427	+		LRK54_RS12585	0.42	-0.3
2,808,427	+		LRK54_RS12585	0.42	-1.8
2,808,427	+		LRK54_RS12585	0.42	+0.0
2,808,427	+		LRK54_RS12585	0.42	+0.1
2,808,427	+		LRK54_RS12585	0.42	-1.8
2,808,427	+		LRK54_RS12585	0.42	-1.5
2,808,427	+		LRK54_RS12585	0.42	-0.0
2,808,427	+		LRK54_RS12585	0.42	-1.0
2,808,427	+		LRK54_RS12585	0.42	-0.4
2,808,427	+		LRK54_RS12585	0.42	+1.5
2,808,427	+		LRK54_RS12585	0.42	+0.5
2,808,427	+		LRK54_RS12585	0.42	-0.7
2,808,427	+		LRK54_RS12585	0.42	-0.1
2,808,427	+		LRK54_RS12585	0.42	-1.7
2,808,427	+		LRK54_RS12585	0.42	-0.4
2,808,427	+		LRK54_RS12585	0.42	+0.8
2,808,427	+		LRK54_RS12585	0.42	-0.4
2,808,427	+		LRK54_RS12585	0.42	-0.1
2,808,427	+		LRK54_RS12585	0.42	+0.3
2,808,427	+		LRK54_RS12585	0.42	-1.4
2,808,427	+		LRK54_RS12585	0.42	+0.5
2,808,428	-		LRK54_RS12585	0.42	-1.0
2,808,428	-		LRK54_RS12585	0.42	-1.0
2,808,428	-		LRK54_RS12585	0.42	-0.7
2,808,428	-		LRK54_RS12585	0.42	+0.1
2,808,428	-		LRK54_RS12585	0.42	-0.3
2,808,428	-		LRK54_RS12585	0.42	-0.5
2,808,428	-		LRK54_RS12585	0.42	-0.0
2,808,428	-		LRK54_RS12585	0.42	-1.9
2,808,428	-		LRK54_RS12585	0.42	+0.5
2,808,428	-		LRK54_RS12585	0.42	-1.0
2,808,428	-		LRK54_RS12585	0.42	-0.7
2,808,428	-		LRK54_RS12585	0.42	+0.3
2,808,428	-		LRK54_RS12585	0.42	-0.1
2,808,428	-		LRK54_RS12585	0.42	-0.1
2,808,428	-		LRK54_RS12585	0.42	-1.3
2,808,428	-		LRK54_RS12585	0.42	+0.9
2,808,428	-		LRK54_RS12585	0.42	-0.5
2,808,428	-		LRK54_RS12585	0.42	+1.5
2,808,428	-		LRK54_RS12585	0.42	-1.4
2,808,428	-		LRK54_RS12585	0.42	-1.4
2,808,428	-		LRK54_RS12585	0.42	+0.5
2,808,428	-		LRK54_RS12585	0.42	+1.2
2,808,428	-		LRK54_RS12585	0.42	-1.3
2,808,428	-		LRK54_RS12585	0.42	+0.2
2,808,428	-		LRK54_RS12585	0.42	-0.2
2,808,428	-		LRK54_RS12585	0.42	+0.2
2,808,428	-		LRK54_RS12585	0.42	+0.0
2,808,428	-		LRK54_RS12585	0.42	-0.4
2,808,428	-		LRK54_RS12585	0.42	-1.5
2,808,428	-		LRK54_RS12585	0.42	-0.6
2,808,428	-		LRK54_RS12585	0.42	-0.4
2,808,564	+				+1.5
2,808,564	+				-0.6
2,808,564	+				-0.7
2,808,564	+				-0.4
2,808,564	+				-2.1
2,808,565	-				-0.9
2,808,565	-				+0.4
2,808,565	-				+2.0
2,808,596	+				-0.6
2,808,596	+				+0.5
2,808,596	+				+0.1
2,808,596	+				+0.3
2,808,596	+				-1.4
2,808,596	+				+0.4
2,808,596	+				+0.2
2,808,596	+				-2.1
2,808,596	+				-1.2
2,808,596	+				-0.5
2,808,596	+				-0.6
2,808,596	+				+0.1
2,808,596	+				-0.2
2,808,596	+				-0.3
2,808,596	+				-1.4
2,808,596	+				-1.5
2,808,597	-				+1.9
2,808,597	-				+1.0
2,808,597	-				-0.0
2,808,597	-				+0.1
2,808,597	-				-0.5
2,808,597	-				-1.2
2,808,597	-				-1.2
2,808,597	-				+0.2
2,808,597	-				+0.0
2,808,597	-				-1.1
2,808,597	-				-0.3
2,808,597	-				-0.0
2,808,597	-				-1.0
2,808,597	-				+0.3
2,808,597	-				-0.7
2,808,597	-				+0.1
2,808,597	-				+0.1
2,808,597	-				+0.3
2,808,597	-				-1.1
2,808,642	+				+0.3
2,808,642	+				+0.3
2,808,642	+				+0.1
2,808,642	+				-0.7
2,808,642	+				+0.4
2,808,642	+				+0.3
2,808,642	+				-1.2
2,808,643	-				+0.1
2,808,643	-				-0.7
2,808,643	-				+0.6
2,808,643	-				-0.4
2,808,643	-				+4.0