Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2185 and Shewana3_2186 overlap by 2 nucleotides Shewana3_2186 and Shewana3_2187 are separated by 23 nucleotides Shewana3_2187 and Shewana3_2188 are separated by 2 nucleotides
Shewana3_2185: Shewana3_2185 - no description, at 2,623,935 to 2,624,186
_2185
Shewana3_2186: Shewana3_2186 - Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit-like protein (RefSeq), at 2,624,185 to 2,624,715
_2186
Shewana3_2187: Shewana3_2187 - hypothetical protein (RefSeq), at 2,624,739 to 2,626,139
_2187
Shewana3_2188: Shewana3_2188 - hypothetical protein (RefSeq), at 2,626,142 to 2,629,153
_2188
Position (kb)
2624
2625
2626
2627 Strain fitness (log2 ratio)
-2
-1
0
1 at 2623.909 kb on - strand at 2623.953 kb on + strand at 2624.045 kb on - strand, within Shewana3_2185 at 2624.397 kb on - strand, within Shewana3_2186 at 2624.405 kb on - strand, within Shewana3_2186 at 2624.456 kb on - strand, within Shewana3_2186 at 2624.571 kb on - strand, within Shewana3_2186 at 2624.818 kb on + strand at 2624.818 kb on + strand at 2624.821 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.826 kb on - strand at 2624.927 kb on - strand, within Shewana3_2187 at 2624.943 kb on - strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.136 kb on + strand, within Shewana3_2187 at 2625.315 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.367 kb on + strand, within Shewana3_2187 at 2625.375 kb on - strand, within Shewana3_2187 at 2625.644 kb on - strand, within Shewana3_2187 at 2625.923 kb on + strand, within Shewana3_2187 at 2626.060 kb on + strand at 2626.239 kb on + strand at 2626.337 kb on - strand at 2626.734 kb on - strand, within Shewana3_2188 at 2626.753 kb on + strand, within Shewana3_2188 at 2626.940 kb on - strand, within Shewana3_2188 at 2626.981 kb on + strand, within Shewana3_2188 at 2626.989 kb on - strand, within Shewana3_2188 at 2626.989 kb on - strand, within Shewana3_2188 at 2627.065 kb on - strand, within Shewana3_2188 at 2627.133 kb on - strand, within Shewana3_2188
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,623,909 - +0.0 2,623,953 + +0.2 2,624,045 - Shewana3_2185 0.44 -1.3 2,624,397 - Shewana3_2186 0.40 +0.7 2,624,405 - Shewana3_2186 0.41 -0.8 2,624,456 - Shewana3_2186 0.51 -0.3 2,624,571 - Shewana3_2186 0.73 -0.3 2,624,818 + +0.7 2,624,818 + +1.7 2,624,821 - +0.2 2,624,826 - -0.8 2,624,826 - +0.2 2,624,826 - -0.6 2,624,927 - Shewana3_2187 0.13 +0.2 2,624,943 - Shewana3_2187 0.15 +0.7 2,625,136 + Shewana3_2187 0.28 -0.3 2,625,136 + Shewana3_2187 0.28 -1.6 2,625,315 + Shewana3_2187 0.41 +1.7 2,625,367 + Shewana3_2187 0.45 -2.1 2,625,367 + Shewana3_2187 0.45 +1.7 2,625,375 - Shewana3_2187 0.45 -2.0 2,625,644 - Shewana3_2187 0.65 -0.3 2,625,923 + Shewana3_2187 0.85 -0.3 2,626,060 + +0.7 2,626,239 + +1.7 2,626,337 - +1.0 2,626,734 - Shewana3_2188 0.20 -1.7 2,626,753 + Shewana3_2188 0.20 +0.2 2,626,940 - Shewana3_2188 0.26 -2.3 2,626,981 + Shewana3_2188 0.28 +0.7 2,626,989 - Shewana3_2188 0.28 -2.0 2,626,989 - Shewana3_2188 0.28 +1.7 2,627,065 - Shewana3_2188 0.31 +0.4 2,627,133 - Shewana3_2188 0.33 +0.7
Or see this region's nucleotide sequence