Strain Fitness in Shewanella loihica PV-4 around Shew_2810
Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,329,551 | - | Shew_2809 | 0.48 | -0.2 | |
3,329,758 | - | Shew_2809 | 0.70 | +0.8 | |
3,329,770 | - | Shew_2809 | 0.72 | -0.4 | |
3,329,923 | - | Shew_2809 | 0.88 | +0.4 | |
3,330,277 | - | +0.1 | |||
3,330,505 | + | Shew_2810 | 0.21 | -0.8 | |
3,330,736 | - | Shew_2810 | 0.45 | -1.3 | |
3,330,778 | + | Shew_2810 | 0.49 | -0.4 | |
3,330,890 | - | Shew_2810 | 0.61 | +0.6 | |
3,331,031 | + | Shew_2810 | 0.75 | +0.8 | |
3,331,125 | - | Shew_2810 | 0.84 | -0.0 | |
3,331,442 | + | Shew_2811 | 0.17 | +0.2 | |
3,331,741 | + | Shew_2811 | 0.57 | -0.5 | |
3,331,881 | - | Shew_2811 | 0.76 | -0.5 | |
3,331,912 | + | Shew_2811 | 0.81 | +0.4 | |
3,332,106 | - | +0.8 | |||
3,332,108 | + | -0.3 | |||
3,332,201 | - | +0.4 | |||
3,332,203 | + | +0.3 | |||
3,332,213 | - | +0.2 |
Or see this region's nucleotide sequence