Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17225

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
4,298,387	-		CA265_RS17220	0.35	-0.6
4,298,412	+		CA265_RS17220	0.39	-0.7
4,298,426	+		CA265_RS17220	0.42	-0.1
4,298,427	-		CA265_RS17220	0.42	-1.1
4,298,490	+		CA265_RS17220	0.52	-0.8
4,298,490	+		CA265_RS17220	0.52	-0.8
4,298,565	+		CA265_RS17220	0.64	+0.0
4,298,565	+		CA265_RS17220	0.64	-0.3
4,298,566	-		CA265_RS17220	0.64	-1.5
4,298,618	+		CA265_RS17220	0.72	+0.5
4,298,813	-				+0.1
4,298,860	+				+0.1
4,298,883	+				-0.9
4,298,884	-				+0.8
4,298,966	-				-0.3
4,298,966	-				+1.2
4,298,986	+				-0.3
4,298,986	+				-0.3
4,299,081	+				+0.5
4,299,199	+				-0.5
4,299,243	+				+0.3
4,299,272	+				-3.9
4,299,282	-				-0.4
4,299,306	-				+0.3
4,299,345	-				-0.8
4,299,427	+				-2.4
4,299,460	+				-3.5
4,299,461	-				-2.6
4,299,564	+				-1.7
4,299,610	+		CA265_RS17225	0.10	-1.7
4,299,612	+		CA265_RS17225	0.10	-2.3
4,299,642	+		CA265_RS17225	0.12	-2.0
4,299,642	+		CA265_RS17225	0.12	-2.7
4,299,658	-		CA265_RS17225	0.12	-2.5
4,299,658	-		CA265_RS17225	0.12	-3.3
4,299,739	+		CA265_RS17225	0.15	-1.2
4,299,742	-		CA265_RS17225	0.15	-1.5
4,299,855	+		CA265_RS17225	0.20	-1.4
4,299,861	+		CA265_RS17225	0.20	-2.7
4,299,902	+		CA265_RS17225	0.21	-3.0
4,299,909	-		CA265_RS17225	0.22	-3.1
4,299,972	+		CA265_RS17225	0.24	-3.2
4,299,976	-		CA265_RS17225	0.24	-2.1
4,300,028	+		CA265_RS17225	0.26	-0.8
4,300,028	+		CA265_RS17225	0.26	-3.2
4,300,029	-		CA265_RS17225	0.26	-4.3
4,300,067	+		CA265_RS17225	0.28	-2.2
4,300,068	-		CA265_RS17225	0.28	-2.8
4,300,152	+		CA265_RS17225	0.31	-2.4
4,300,251	+		CA265_RS17225	0.35	-4.6
4,300,256	-		CA265_RS17225	0.35	-3.8
4,300,320	+		CA265_RS17225	0.37	-4.3
4,300,321	-		CA265_RS17225	0.37	-4.5
4,300,322	+		CA265_RS17225	0.37	-1.9
4,300,323	-		CA265_RS17225	0.37	-2.9
4,300,323	-		CA265_RS17225	0.37	-2.3
4,300,342	-		CA265_RS17225	0.38	-2.8
4,300,344	+		CA265_RS17225	0.38	-1.4
4,300,344	+		CA265_RS17225	0.38	-2.1
4,300,345	-		CA265_RS17225	0.38	-1.6
4,300,409	+		CA265_RS17225	0.41	-2.8
4,300,410	-		CA265_RS17225	0.41	+0.3
4,300,410	-		CA265_RS17225	0.41	-2.9
4,300,423	-		CA265_RS17225	0.41	-2.6
4,300,432	-		CA265_RS17225	0.41	-3.1
4,300,464	+		CA265_RS17225	0.43	-1.6
4,300,464	+		CA265_RS17225	0.43	-2.8
4,300,472	-		CA265_RS17225	0.43	-3.5
4,300,476	+		CA265_RS17225	0.43	-3.0
4,300,488	+		CA265_RS17225	0.43	-1.9
4,300,488	+		CA265_RS17225	0.43	-2.2
4,300,489	-		CA265_RS17225	0.44	-0.7
4,300,531	-		CA265_RS17225	0.45	-1.3
4,300,550	+		CA265_RS17225	0.46	-2.0
4,300,550	+		CA265_RS17225	0.46	-0.1
4,300,578	+		CA265_RS17225	0.47	-3.6
4,300,647	-		CA265_RS17225	0.50	-2.1
4,300,751	+		CA265_RS17225	0.53	-2.8
4,300,754	+		CA265_RS17225	0.54	-1.5
4,300,808	-		CA265_RS17225	0.56	-3.3
4,300,853	+		CA265_RS17225	0.57	-3.2
4,300,854	-		CA265_RS17225	0.57	-0.8
4,300,854	-		CA265_RS17225	0.57	-4.0
4,300,918	-		CA265_RS17225	0.60	-1.1
4,301,101	-		CA265_RS17225	0.67	-2.0
4,301,101	-		CA265_RS17225	0.67	-2.2
4,301,123	-		CA265_RS17225	0.67	-2.0
4,301,129	+		CA265_RS17225	0.68	-3.7
4,301,129	+		CA265_RS17225	0.68	-4.7
4,301,150	+		CA265_RS17225	0.69	-2.8
4,301,150	+		CA265_RS17225	0.69	-0.2
4,301,175	+		CA265_RS17225	0.69	-2.2
4,301,214	-		CA265_RS17225	0.71	-2.5
4,301,217	+		CA265_RS17225	0.71	-2.3
4,301,218	-		CA265_RS17225	0.71	-1.2
4,301,218	-		CA265_RS17225	0.71	-1.4
4,301,239	+		CA265_RS17225	0.72	-1.8
4,301,263	+		CA265_RS17225	0.73	+0.3
4,301,264	-		CA265_RS17225	0.73	-2.4
4,301,264	-		CA265_RS17225	0.73	-1.2
4,301,264	-		CA265_RS17225	0.73	-1.6
4,301,291	+		CA265_RS17225	0.74	-1.2
4,301,292	-		CA265_RS17225	0.74	-4.7
4,301,299	-		CA265_RS17225	0.74	-3.5
4,301,394	-		CA265_RS17225	0.78	+1.9
4,301,394	-		CA265_RS17225	0.78	-3.8
4,301,408	+		CA265_RS17225	0.78	-3.8
4,301,416	-		CA265_RS17225	0.79	-1.2
4,301,454	-		CA265_RS17225	0.80	-1.2
4,301,483	-		CA265_RS17225	0.81	-3.8
4,301,483	-		CA265_RS17225	0.81	-1.5
4,301,483	-		CA265_RS17225	0.81	-2.7
4,301,554	-		CA265_RS17225	0.84	-0.9
4,301,559	-		CA265_RS17225	0.84	-1.7
4,301,559	-		CA265_RS17225	0.84	-2.6
4,301,595	-		CA265_RS17225	0.85	-2.7
4,301,628	+		CA265_RS17225	0.87	-2.1
4,301,648	+		CA265_RS17225	0.87	-3.2
4,301,648	+		CA265_RS17225	0.87	-1.8
4,301,706	+		CA265_RS17225	0.90	-1.5
4,301,706	+		CA265_RS17225	0.90	-2.2
4,301,706	+		CA265_RS17225	0.90	-1.3
4,301,707	-		CA265_RS17225	0.90	-3.6
4,301,707	-		CA265_RS17225	0.90	-2.4
4,301,711	+		CA265_RS17225	0.90	-2.5
4,301,722	+				-2.7
4,301,750	-				+0.3
4,301,750	-				-3.4
4,301,770	+				-2.8
4,301,770	+				-1.7
4,301,771	-				-2.8
4,301,817	-				-2.9
4,301,910	+				-2.2
4,301,919	+				-3.4
4,301,930	+				-2.5
4,301,969	-				-1.7
4,302,000	+				+0.4
4,302,017	+				+0.6
4,302,083	+				+0.2
4,302,153	+				-0.5
4,302,204	+				+0.3
4,302,205	-				+0.7
4,302,205	-				-0.1
4,302,205	-				-0.6
4,302,257	+				-1.1
4,302,258	-				-1.5
4,302,258	-				-0.2
4,302,270	-				+1.9
4,302,321	+		CA265_RS17230	0.12	+0.5
4,302,405	+		CA265_RS17230	0.20	+0.3
4,302,466	+		CA265_RS17230	0.27	+0.2
4,302,521	+		CA265_RS17230	0.32	+0.3
4,302,561	+		CA265_RS17230	0.37	-0.1
4,302,561	+		CA265_RS17230	0.37	-0.2
4,302,562	-		CA265_RS17230	0.37	-0.7
4,302,594	+		CA265_RS17230	0.40	+1.3
4,302,598	+		CA265_RS17230	0.40	+0.8
4,302,598	+		CA265_RS17230	0.40	-0.4
4,302,598	+		CA265_RS17230	0.40	+0.5
4,302,598	+		CA265_RS17230	0.40	-0.5
4,302,599	-		CA265_RS17230	0.41	-0.9
4,302,599	-		CA265_RS17230	0.41	-0.3
4,302,599	-		CA265_RS17230	0.41	-0.7
4,302,650	-		CA265_RS17230	0.46	-0.0
4,302,654	+		CA265_RS17230	0.46	+0.9
4,302,930	+		CA265_RS17230	0.75	-0.1
4,302,945	+		CA265_RS17230	0.77	-0.8
4,302,946	-		CA265_RS17230	0.77	+0.1
4,302,946	-		CA265_RS17230	0.77	-0.4
4,302,970	-		CA265_RS17230	0.79	+1.2
4,302,970	-		CA265_RS17230	0.79	-0.5