Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11610
Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Dimethyl Sulfoxide 7.5 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,878,974 | - | CA265_RS11605 | 0.27 | +0.4 | |
| 2,879,005 | + | CA265_RS11605 | 0.29 | -0.3 | |
| 2,879,120 | + | CA265_RS11605 | 0.39 | -0.1 | |
| 2,879,172 | - | CA265_RS11605 | 0.43 | -0.8 | |
| 2,879,195 | + | CA265_RS11605 | 0.45 | -0.8 | |
| 2,879,195 | + | CA265_RS11605 | 0.45 | -0.1 | |
| 2,879,195 | + | CA265_RS11605 | 0.45 | +0.4 | |
| 2,879,196 | - | CA265_RS11605 | 0.45 | -0.8 | |
| 2,879,196 | - | CA265_RS11605 | 0.45 | -1.0 | |
| 2,879,200 | + | CA265_RS11605 | 0.46 | +0.1 | |
| 2,879,200 | + | CA265_RS11605 | 0.46 | -0.2 | |
| 2,879,228 | + | CA265_RS11605 | 0.48 | +0.2 | |
| 2,879,294 | + | CA265_RS11605 | 0.54 | +1.2 | |
| 2,879,579 | + | CA265_RS11605 | 0.78 | +1.4 | |
| 2,879,584 | - | CA265_RS11605 | 0.78 | +0.0 | |
| 2,879,645 | + | CA265_RS11605 | 0.83 | -0.0 | |
| 2,879,699 | + | CA265_RS11605 | 0.88 | +0.9 | |
| 2,879,804 | + | -0.4 | |||
| 2,879,853 | - | -0.0 | |||
| 2,879,854 | + | +0.2 | |||
| 2,879,858 | + | -0.1 | |||
| 2,879,858 | + | +1.6 | |||
| 2,879,879 | + | +0.0 | |||
| 2,879,924 | + | -0.6 | |||
| 2,880,087 | + | CA265_RS11610 | 0.72 | -0.4 | |
| 2,880,093 | + | CA265_RS11610 | 0.75 | -0.7 |
Or see this region's nucleotide sequence