Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04290

Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04285 and CA265_RS04290 are separated by 454 nucleotidesCA265_RS04290 and CA265_RS04295 are separated by 5 nucleotidesCA265_RS04295 and CA265_RS04300 are separated by 338 nucleotides CA265_RS04285: CA265_RS04285 - RNA polymerase sigma factor RpoD, at 1,036,953 to 1,037,813 _RS04285 CA265_RS04290: CA265_RS04290 - hypothetical protein, at 1,038,268 to 1,038,825 _RS04290 CA265_RS04295: CA265_RS04295 - transcriptional regulator, at 1,038,831 to 1,039,037 _RS04295 CA265_RS04300: CA265_RS04300 - succinate--CoA ligase subunit beta, at 1,039,376 to 1,040,575 _RS04300 Position (kb) 1038 1039Strain fitness (log2 ratio) -2 -1 0 1at 1037.840 kb on - strandat 1037.857 kb on - strandat 1037.867 kb on - strandat 1037.930 kb on - strandat 1037.955 kb on - strandat 1038.164 kb on - strandat 1038.213 kb on - strandat 1038.263 kb on + strandat 1038.306 kb on - strandat 1038.308 kb on + strandat 1038.309 kb on - strandat 1038.390 kb on + strand, within CA265_RS04290at 1038.526 kb on + strand, within CA265_RS04290at 1038.627 kb on - strand, within CA265_RS04290at 1038.650 kb on + strand, within CA265_RS04290at 1038.651 kb on - strand, within CA265_RS04290at 1038.770 kb on + strandat 1038.822 kb on - strandat 1038.830 kb on + strandat 1038.845 kb on - strandat 1038.851 kb on - strandat 1038.912 kb on - strand, within CA265_RS04295at 1038.994 kb on + strand, within CA265_RS04295at 1039.013 kb on + strand, within CA265_RS04295at 1039.162 kb on + strandat 1039.197 kb on - strandat 1039.207 kb on - strandat 1039.221 kb on + strandat 1039.225 kb on + strandat 1039.226 kb on - strandat 1039.226 kb on - strandat 1039.332 kb on - strandat 1039.378 kb on - strandat 1039.398 kb on + strandat 1039.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol%
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1,037,840 - +1.2
1,037,857 - -0.0
1,037,867 - -0.5
1,037,930 - -1.1
1,037,955 - -0.1
1,038,164 - -0.0
1,038,213 - +0.6
1,038,263 + +0.0
1,038,306 - +0.3
1,038,308 + -1.3
1,038,309 - -0.6
1,038,390 + CA265_RS04290 0.22 -2.5
1,038,526 + CA265_RS04290 0.46 -1.5
1,038,627 - CA265_RS04290 0.64 +0.1
1,038,650 + CA265_RS04290 0.68 -0.6
1,038,651 - CA265_RS04290 0.69 +0.2
1,038,770 + +0.2
1,038,822 - -0.2
1,038,830 + +0.1
1,038,845 - +0.1
1,038,851 - -0.1
1,038,912 - CA265_RS04295 0.39 -0.3
1,038,994 + CA265_RS04295 0.79 -1.1
1,039,013 + CA265_RS04295 0.88 -1.1
1,039,162 + +0.1
1,039,197 - -0.4
1,039,207 - +0.1
1,039,221 + -0.6
1,039,225 + -0.6
1,039,226 - -0.3
1,039,226 - +0.1
1,039,332 - +0.8
1,039,378 - -1.1
1,039,398 + +1.3
1,039,403 + +0.0

Or see this region's nucleotide sequence