Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00830

Experiment: R2A with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00825 and CA265_RS00830 are separated by 13 nucleotidesCA265_RS00830 and CA265_RS00835 are separated by 166 nucleotides CA265_RS00825: CA265_RS00825 - hypothetical protein, at 196,173 to 197,621 _RS00825 CA265_RS00830: CA265_RS00830 - hypothetical protein, at 197,635 to 198,066 _RS00830 CA265_RS00835: CA265_RS00835 - hypothetical protein, at 198,233 to 199,228 _RS00835 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.730 kb on - strand, within CA265_RS00825at 196.741 kb on - strand, within CA265_RS00825at 196.806 kb on + strand, within CA265_RS00825at 196.807 kb on - strand, within CA265_RS00825at 196.811 kb on + strand, within CA265_RS00825at 196.832 kb on + strand, within CA265_RS00825at 196.866 kb on + strand, within CA265_RS00825at 196.885 kb on - strand, within CA265_RS00825at 196.940 kb on + strand, within CA265_RS00825at 196.941 kb on - strand, within CA265_RS00825at 196.990 kb on + strand, within CA265_RS00825at 197.012 kb on + strand, within CA265_RS00825at 197.110 kb on + strand, within CA265_RS00825at 197.111 kb on - strand, within CA265_RS00825at 197.155 kb on - strand, within CA265_RS00825at 197.168 kb on + strand, within CA265_RS00825at 197.209 kb on + strand, within CA265_RS00825at 197.210 kb on - strand, within CA265_RS00825at 197.268 kb on - strand, within CA265_RS00825at 197.269 kb on + strand, within CA265_RS00825at 197.276 kb on - strand, within CA265_RS00825at 197.295 kb on + strandat 197.378 kb on - strand, within CA265_RS00825at 197.411 kb on - strand, within CA265_RS00825at 197.519 kb on + strandat 197.536 kb on - strandat 197.536 kb on - strandat 197.537 kb on + strandat 197.549 kb on + strandat 197.550 kb on - strandat 197.661 kb on + strandat 197.672 kb on + strandat 197.672 kb on + strandat 197.673 kb on - strandat 197.705 kb on + strand, within CA265_RS00830at 197.790 kb on + strand, within CA265_RS00830at 197.795 kb on + strand, within CA265_RS00830at 197.796 kb on - strand, within CA265_RS00830at 197.889 kb on + strand, within CA265_RS00830at 197.962 kb on - strand, within CA265_RS00830at 197.996 kb on + strand, within CA265_RS00830at 198.064 kb on + strandat 198.065 kb on - strandat 198.068 kb on + strandat 198.137 kb on + strandat 198.138 kb on - strandat 198.138 kb on - strandat 198.191 kb on - strandat 198.196 kb on - strandat 198.225 kb on + strandat 198.257 kb on + strandat 198.375 kb on - strand, within CA265_RS00835at 198.375 kb on - strand, within CA265_RS00835at 198.467 kb on + strand, within CA265_RS00835at 198.472 kb on + strand, within CA265_RS00835at 198.472 kb on + strand, within CA265_RS00835at 198.546 kb on - strand, within CA265_RS00835at 198.546 kb on - strand, within CA265_RS00835at 198.583 kb on - strand, within CA265_RS00835at 198.668 kb on - strand, within CA265_RS00835at 198.710 kb on + strand, within CA265_RS00835at 198.757 kb on + strand, within CA265_RS00835at 198.757 kb on + strand, within CA265_RS00835at 198.758 kb on - strand, within CA265_RS00835at 198.760 kb on - strand, within CA265_RS00835at 198.760 kb on - strand, within CA265_RS00835at 198.760 kb on - strand, within CA265_RS00835at 198.838 kb on - strand, within CA265_RS00835at 198.838 kb on - strandat 198.860 kb on - strand, within CA265_RS00835at 198.982 kb on + strand, within CA265_RS00835at 199.002 kb on + strand, within CA265_RS00835at 199.028 kb on + strand, within CA265_RS00835at 199.049 kb on - strand, within CA265_RS00835at 199.060 kb on + strand, within CA265_RS00835at 199.061 kb on - strand, within CA265_RS00835at 199.061 kb on - strand, within CA265_RS00835at 199.063 kb on - strand, within CA265_RS00835

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 7.5 vol%
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196,730 - CA265_RS00825 0.38 -0.3
196,741 - CA265_RS00825 0.39 -0.6
196,806 + CA265_RS00825 0.44 +0.5
196,807 - CA265_RS00825 0.44 -0.2
196,811 + CA265_RS00825 0.44 -0.6
196,832 + CA265_RS00825 0.45 +0.4
196,866 + CA265_RS00825 0.48 +0.1
196,885 - CA265_RS00825 0.49 +0.6
196,940 + CA265_RS00825 0.53 -1.3
196,941 - CA265_RS00825 0.53 -1.0
196,990 + CA265_RS00825 0.56 -0.5
197,012 + CA265_RS00825 0.58 -0.2
197,110 + CA265_RS00825 0.65 -1.2
197,111 - CA265_RS00825 0.65 -2.2
197,155 - CA265_RS00825 0.68 -1.6
197,168 + CA265_RS00825 0.69 -0.6
197,209 + CA265_RS00825 0.71 +0.8
197,210 - CA265_RS00825 0.72 +0.6
197,268 - CA265_RS00825 0.76 -0.1
197,269 + CA265_RS00825 0.76 +0.2
197,276 - CA265_RS00825 0.76 +0.1
197,295 + +0.4
197,378 - CA265_RS00825 0.83 +0.7
197,411 - CA265_RS00825 0.85 -0.7
197,519 + -1.2
197,536 - +0.3
197,536 - +0.1
197,537 + -0.2
197,549 + -0.4
197,550 - +0.7
197,661 + -0.1
197,672 + -0.0
197,672 + -0.5
197,673 - -0.8
197,705 + CA265_RS00830 0.16 -1.9
197,790 + CA265_RS00830 0.36 -0.8
197,795 + CA265_RS00830 0.37 -0.4
197,796 - CA265_RS00830 0.37 -0.7
197,889 + CA265_RS00830 0.59 -0.6
197,962 - CA265_RS00830 0.76 -1.0
197,996 + CA265_RS00830 0.84 +0.3
198,064 + -0.2
198,065 - -0.2
198,068 + -0.0
198,137 + -1.2
198,138 - +1.2
198,138 - -0.1
198,191 - -0.1
198,196 - +0.5
198,225 + +0.3
198,257 + +0.6
198,375 - CA265_RS00835 0.14 +0.2
198,375 - CA265_RS00835 0.14 -0.4
198,467 + CA265_RS00835 0.23 +0.4
198,472 + CA265_RS00835 0.24 -0.2
198,472 + CA265_RS00835 0.24 -0.6
198,546 - CA265_RS00835 0.31 +0.4
198,546 - CA265_RS00835 0.31 +0.5
198,583 - CA265_RS00835 0.35 +0.7
198,668 - CA265_RS00835 0.44 -1.1
198,710 + CA265_RS00835 0.48 -0.1
198,757 + CA265_RS00835 0.53 +1.8
198,757 + CA265_RS00835 0.53 +0.4
198,758 - CA265_RS00835 0.53 -1.1
198,760 - CA265_RS00835 0.53 +1.2
198,760 - CA265_RS00835 0.53 -0.5
198,760 - CA265_RS00835 0.53 -1.2
198,838 - CA265_RS00835 0.61 +0.2
198,838 - +2.4
198,860 - CA265_RS00835 0.63 -1.2
198,982 + CA265_RS00835 0.75 -0.2
199,002 + CA265_RS00835 0.77 -1.5
199,028 + CA265_RS00835 0.80 +0.4
199,049 - CA265_RS00835 0.82 -0.1
199,060 + CA265_RS00835 0.83 +0.4
199,061 - CA265_RS00835 0.83 +0.1
199,061 - CA265_RS00835 0.83 +0.8
199,063 - CA265_RS00835 0.83 +0.1

Or see this region's nucleotide sequence