Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4110

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
4,787,455	+				+0.5
4,787,456	-				+0.1
4,787,473	+				+0.0
4,787,567	+				+0.0
4,787,568	-				+0.3
4,787,575	+				+0.2
4,787,576	-				+0.1
4,787,576	-				+0.4
4,787,576	-				+0.5
4,787,576	-				+0.4
4,787,576	-				+0.3
4,787,578	+				+1.0
4,787,578	+				-0.2
4,787,578	+				+0.8
4,787,578	+				+0.3
4,787,579	-				-0.6
4,787,579	-				+0.1
4,787,579	-				+0.0
4,787,630	+				+0.8
4,787,630	+				+0.4
4,787,630	+				-0.2
4,787,630	+				+0.0
4,787,631	-				+0.3
4,787,631	-				+0.9
4,787,631	-				+0.6
4,787,631	-				-0.2
4,787,631	-				+1.1
4,787,633	+				-0.0
4,787,633	+				+0.4
4,787,633	+				+0.2
4,787,634	-				-0.3
4,787,634	-				+0.2
4,787,634	-				+0.6
4,787,634	-				+0.2
4,787,757	+		Pf6N2E2_4108	0.29	+0.9
4,787,758	-		Pf6N2E2_4108	0.29	-0.2
4,787,758	-		Pf6N2E2_4108	0.29	+0.3
4,787,758	-		Pf6N2E2_4108	0.29	-0.5
4,787,758	-		Pf6N2E2_4108	0.29	+0.0
4,787,758	-		Pf6N2E2_4108	0.29	+0.9
4,787,758	-		Pf6N2E2_4108	0.29	+0.1
4,787,758	-		Pf6N2E2_4108	0.29	+0.2
4,787,783	+		Pf6N2E2_4108	0.36	-1.0
4,787,809	+		Pf6N2E2_4108	0.43	+0.3
4,787,809	+		Pf6N2E2_4108	0.43	+0.5
4,787,809	+		Pf6N2E2_4108	0.43	-0.1
4,787,809	+		Pf6N2E2_4108	0.43	-0.7
4,787,809	+		Pf6N2E2_4108	0.43	-0.0
4,787,809	+		Pf6N2E2_4108	0.43	+0.7
4,787,809	+		Pf6N2E2_4108	0.43	-1.1
4,787,809	+		Pf6N2E2_4108	0.43	-0.3
4,787,810	-		Pf6N2E2_4108	0.44	-0.2
4,787,810	-		Pf6N2E2_4108	0.44	+0.5
4,787,810	-		Pf6N2E2_4108	0.44	-0.2
4,788,012	+				+0.3
4,788,013	-				+0.7
4,788,016	+				+0.5
4,788,016	+				-1.6
4,788,016	+				+0.3
4,788,017	-				+0.8
4,788,017	-				-0.3
4,788,017	-				+0.6
4,788,017	-				-1.2
4,788,060	+				+0.5
4,788,061	-				-0.4
4,788,076	-				+0.6
4,788,179	+				+0.1
4,788,179	+				+1.7
4,788,179	+				+1.1
4,788,180	-				-0.4
4,788,180	-				-0.2
4,788,180	-				+0.7
4,788,180	-				-0.5
4,788,198	+				-0.0
4,788,198	+				-1.1
4,788,350	-				+0.2
4,788,458	+				+0.9
4,788,458	+				+0.6
4,788,458	+				+0.2
4,788,458	+				-0.9
4,788,459	-				-0.3
4,788,459	-				-0.3
4,788,459	-				+0.4
4,788,459	-				+0.3
4,788,459	-				-0.8
4,788,459	-				-0.0
4,788,461	+				-0.6
4,788,461	+				+0.1
4,788,461	+				-0.6
4,788,461	+				+0.4
4,788,461	+				-0.3
4,788,462	-				+2.2
4,788,462	-				-0.6
4,788,466	+				+0.9
4,788,467	-				+1.8
4,788,491	-				+0.0
4,788,536	+		Pf6N2E2_4110	0.33	-0.6
4,788,537	-		Pf6N2E2_4110	0.34	-1.1
4,788,546	-		Pf6N2E2_4110	0.37	+0.1
4,788,546	-		Pf6N2E2_4110	0.37	-1.6
4,788,597	+		Pf6N2E2_4110	0.54	-0.6
4,788,635	+		Pf6N2E2_4110	0.66	+0.1
4,788,636	-		Pf6N2E2_4110	0.67	+0.6
4,788,656	+		Pf6N2E2_4110	0.73	-0.6
4,788,656	+		Pf6N2E2_4110	0.73	+0.5
4,788,656	+		Pf6N2E2_4110	0.73	-1.0
4,788,731	+				-0.4
4,788,731	+				+1.2
4,788,731	+				+0.6
4,788,731	+				+0.6
4,788,731	+				+1.1
4,788,731	+				-0.0
4,788,737	+				+0.4
4,788,738	-				-1.1
4,788,766	-				+0.5
4,788,774	+				+0.8
4,788,775	-				-0.0
4,788,853	+				+0.5
4,788,853	+				+0.7
4,788,853	+				-0.8
4,788,853	+				+0.1
4,788,853	+				-0.5
4,788,854	-				+0.5
4,789,008	+		Pf6N2E2_4111	0.26	-0.7
4,789,008	+		Pf6N2E2_4111	0.26	+0.7
4,789,009	-		Pf6N2E2_4111	0.27	-0.1
4,789,009	-		Pf6N2E2_4111	0.27	-0.3
4,789,009	-		Pf6N2E2_4111	0.27	+0.2
4,789,017	+		Pf6N2E2_4111	0.28	-0.0
4,789,019	+		Pf6N2E2_4111	0.29	+0.2
4,789,019	+		Pf6N2E2_4111	0.29	+0.7
4,789,020	-		Pf6N2E2_4111	0.29	-0.3
4,789,020	-		Pf6N2E2_4111	0.29	+0.1
4,789,031	+		Pf6N2E2_4111	0.31	+0.9
4,789,031	+		Pf6N2E2_4111	0.31	+0.7
4,789,031	+		Pf6N2E2_4111	0.31	-0.8
4,789,031	+		Pf6N2E2_4111	0.31	+0.1
4,789,031	+		Pf6N2E2_4111	0.31	+1.0
4,789,031	+		Pf6N2E2_4111	0.31	-0.8
4,789,031	+		Pf6N2E2_4111	0.31	+0.7
4,789,032	-		Pf6N2E2_4111	0.31	+0.6
4,789,036	-		Pf6N2E2_4111	0.32	-0.3
4,789,049	+		Pf6N2E2_4111	0.35	+0.0
4,789,049	+		Pf6N2E2_4111	0.35	+0.2
4,789,050	-		Pf6N2E2_4111	0.35	+0.5
4,789,050	-		Pf6N2E2_4111	0.35	+0.4
4,789,050	-		Pf6N2E2_4111	0.35	+0.5
4,789,068	-		Pf6N2E2_4111	0.39	+0.2
4,789,378	+				+0.2
4,789,378	+				-0.9
4,789,379	-				-0.4
4,789,379	-				+0.7
4,789,379	-				-0.1
4,789,379	-				-0.3
4,789,379	-				-0.1
4,789,379	-				-0.9
4,789,400	-				-0.1
4,789,426	+				+0.6
4,789,426	+				+0.7
4,789,427	-				-1.0
4,789,430	+				+0.3
4,789,430	+				+0.1
4,789,430	+				+0.5
4,789,430	+				-0.6
4,789,430	+				+0.6
4,789,430	+				-0.1
4,789,430	+				+0.4
4,789,430	+				+0.3
4,789,430	+				-0.3
4,789,430	+				+0.9
4,789,430	+				-0.8
4,789,430	+				+0.1
4,789,431	-				-0.5
4,789,431	-				+0.7
4,789,431	-				+1.5
4,789,431	-				-0.9
4,789,431	-				-0.4
4,789,431	-				+0.2
4,789,431	-				+0.3
4,789,431	-				+0.9
4,789,431	-				-1.1
4,789,431	-				-0.8
4,789,431	-				+0.2
4,789,431	-				+0.1
4,789,431	-				+0.4
4,789,431	-				-0.3
4,789,431	-				+0.5
4,789,431	-				-0.1
4,789,431	-				-0.1
4,789,431	-				+0.1
4,789,431	-				+0.3
4,789,431	-				+0.8
4,789,431	-				+0.6
4,789,431	-				+1.0
4,789,516	+				-1.9
4,789,516	+				+0.4
4,789,516	+				+0.2
4,789,517	-				-0.0
4,789,517	-				-0.7
4,789,517	-				+0.4
4,789,527	+				+0.1
4,789,527	+				+1.8
4,789,528	-				-0.2
4,789,528	-				+0.4
4,789,528	-				+0.2
4,789,560	+				+0.5
4,789,560	+				-0.6
4,789,560	+				-0.0
4,789,560	+				+0.5
4,789,561	-				+1.1
4,789,561	-				+0.3
4,789,587	+				+0.4
4,789,587	+				+0.3
4,789,588	-				+1.0
4,789,588	-				+0.4
4,789,588	-				+0.2
4,789,606	+				+1.3
4,789,606	+				+0.5
4,789,606	+				+0.6
4,789,606	+				+0.1
4,789,606	+				-0.2
4,789,606	+				-0.1
4,789,607	-				-0.7
4,789,607	-				+0.3
4,789,607	-				+0.1
4,789,607	-				-0.6
4,789,607	-				-0.5
4,789,615	+				+1.0
4,789,616	-				-0.3
4,789,639	+				-1.1
4,789,639	+				-0.1
4,789,639	+				-0.2
4,789,640	-				-0.3
4,789,640	-				+0.3
4,789,640	-				+0.4
4,789,654	-				-2.0
4,789,721	-				-0.8
4,789,721	-				+0.6
4,789,721	-				+1.1