Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0234

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroA and Synpcc7942_0233 are separated by 343 nucleotidesSynpcc7942_0233 and Synpcc7942_0234 are separated by 103 nucleotidesSynpcc7942_0234 and Synpcc7942_0235 are separated by 11 nucleotidesSynpcc7942_0235 and Synpcc7942_0236 are separated by 340 nucleotides Synpcc7942_0232: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 227,939 to 229,285 aroA Synpcc7942_0233: Synpcc7942_0233 - hypothetical protein, at 229,629 to 230,054 _0233 Synpcc7942_0234: Synpcc7942_0234 - hypothetical protein, at 230,158 to 231,150 _0234 Synpcc7942_0235: Synpcc7942_0235 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 231,162 to 231,677 _0235 Synpcc7942_0236: Synpcc7942_0236 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 232,018 to 232,557 _0236 Position (kb) 230 231 232Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 229.320 kb on + strandat 229.400 kb on + strandat 229.463 kb on - strandat 229.564 kb on - strandat 229.684 kb on - strand, within Synpcc7942_0233at 229.796 kb on + strand, within Synpcc7942_0233at 229.949 kb on + strand, within Synpcc7942_0233at 229.957 kb on - strand, within Synpcc7942_0233at 229.991 kb on + strand, within Synpcc7942_0233at 229.991 kb on + strand, within Synpcc7942_0233at 229.996 kb on + strand, within Synpcc7942_0233at 230.021 kb on - strandat 230.075 kb on + strandat 230.080 kb on + strandat 230.083 kb on - strandat 230.083 kb on - strandat 230.106 kb on - strandat 230.114 kb on + strandat 230.114 kb on + strandat 230.114 kb on + strandat 230.122 kb on + strandat 230.123 kb on - strandat 230.123 kb on - strandat 230.155 kb on + strandat 230.165 kb on + strandat 230.177 kb on + strandat 230.187 kb on - strandat 230.220 kb on + strandat 230.241 kb on + strandat 230.242 kb on + strandat 230.249 kb on + strandat 230.266 kb on + strand, within Synpcc7942_0234at 230.267 kb on + strand, within Synpcc7942_0234at 230.274 kb on - strand, within Synpcc7942_0234at 230.274 kb on - strand, within Synpcc7942_0234at 230.301 kb on - strand, within Synpcc7942_0234at 230.321 kb on + strand, within Synpcc7942_0234at 230.324 kb on - strand, within Synpcc7942_0234at 230.333 kb on + strandat 230.333 kb on + strand, within Synpcc7942_0234at 230.333 kb on + strand, within Synpcc7942_0234at 230.333 kb on + strand, within Synpcc7942_0234at 230.341 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.389 kb on - strand, within Synpcc7942_0234at 230.458 kb on - strand, within Synpcc7942_0234at 230.458 kb on - strand, within Synpcc7942_0234at 230.459 kb on + strand, within Synpcc7942_0234at 230.466 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.467 kb on - strand, within Synpcc7942_0234at 230.474 kb on + strand, within Synpcc7942_0234at 230.476 kb on + strand, within Synpcc7942_0234at 230.477 kb on - strand, within Synpcc7942_0234at 230.478 kb on - strand, within Synpcc7942_0234at 230.484 kb on + strand, within Synpcc7942_0234at 230.494 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.495 kb on + strand, within Synpcc7942_0234at 230.497 kb on - strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.505 kb on + strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.513 kb on - strand, within Synpcc7942_0234at 230.532 kb on - strand, within Synpcc7942_0234at 230.574 kb on + strand, within Synpcc7942_0234at 230.574 kb on + strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.582 kb on - strand, within Synpcc7942_0234at 230.593 kb on - strand, within Synpcc7942_0234at 230.614 kb on + strand, within Synpcc7942_0234at 230.615 kb on + strand, within Synpcc7942_0234at 230.622 kb on - strand, within Synpcc7942_0234at 230.623 kb on - strand, within Synpcc7942_0234at 230.652 kb on + strand, within Synpcc7942_0234at 230.658 kb on + strand, within Synpcc7942_0234at 230.658 kb on + strand, within Synpcc7942_0234at 230.661 kb on - strand, within Synpcc7942_0234at 230.666 kb on - strand, within Synpcc7942_0234at 230.666 kb on - strand, within Synpcc7942_0234at 230.667 kb on + strand, within Synpcc7942_0234at 230.669 kb on + strand, within Synpcc7942_0234at 230.669 kb on + strand, within Synpcc7942_0234at 230.677 kb on - strand, within Synpcc7942_0234at 230.691 kb on + strand, within Synpcc7942_0234at 230.701 kb on + strand, within Synpcc7942_0234at 230.716 kb on - strand, within Synpcc7942_0234at 230.721 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.724 kb on + strand, within Synpcc7942_0234at 230.796 kb on + strand, within Synpcc7942_0234at 230.796 kb on + strand, within Synpcc7942_0234at 230.799 kb on - strand, within Synpcc7942_0234at 230.809 kb on - strand, within Synpcc7942_0234at 230.809 kb on - strand, within Synpcc7942_0234at 230.821 kb on - strand, within Synpcc7942_0234at 230.835 kb on + strand, within Synpcc7942_0234at 230.848 kb on - strand, within Synpcc7942_0234at 230.854 kb on - strand, within Synpcc7942_0234at 230.858 kb on + strand, within Synpcc7942_0234at 230.860 kb on + strand, within Synpcc7942_0234at 230.866 kb on - strand, within Synpcc7942_0234at 230.866 kb on - strand, within Synpcc7942_0234at 230.868 kb on - strand, within Synpcc7942_0234at 230.879 kb on - strand, within Synpcc7942_0234at 230.885 kb on + strand, within Synpcc7942_0234at 230.885 kb on + strand, within Synpcc7942_0234at 230.890 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.893 kb on - strand, within Synpcc7942_0234at 230.902 kb on + strand, within Synpcc7942_0234at 230.925 kb on + strand, within Synpcc7942_0234at 230.933 kb on - strand, within Synpcc7942_0234at 230.936 kb on + strand, within Synpcc7942_0234at 230.944 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.959 kb on + strand, within Synpcc7942_0234at 230.961 kb on - strand, within Synpcc7942_0234at 230.967 kb on - strand, within Synpcc7942_0234at 230.985 kb on + strand, within Synpcc7942_0234at 230.985 kb on + strand, within Synpcc7942_0234at 231.003 kb on + strand, within Synpcc7942_0234at 231.011 kb on - strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234at 231.014 kb on + strand, within Synpcc7942_0234at 231.059 kb on + strandat 231.083 kb on + strandat 231.088 kb on - strandat 231.127 kb on + strandat 231.130 kb on + strandat 231.130 kb on + strandat 231.130 kb on + strandat 231.138 kb on - strandat 231.138 kb on - strandat 231.170 kb on + strandat 231.203 kb on - strandat 231.205 kb on - strandat 231.205 kb on - strandat 231.218 kb on - strand, within Synpcc7942_0235at 231.227 kb on - strand, within Synpcc7942_0235at 231.233 kb on + strand, within Synpcc7942_0235at 231.241 kb on - strand, within Synpcc7942_0235at 231.246 kb on + strand, within Synpcc7942_0235at 231.251 kb on - strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.256 kb on + strand, within Synpcc7942_0235at 231.262 kb on + strand, within Synpcc7942_0235at 231.287 kb on - strand, within Synpcc7942_0235at 231.312 kb on - strand, within Synpcc7942_0235at 231.322 kb on - strand, within Synpcc7942_0235at 231.347 kb on + strand, within Synpcc7942_0235at 231.359 kb on - strand, within Synpcc7942_0235at 231.380 kb on - strand, within Synpcc7942_0235at 231.384 kb on + strand, within Synpcc7942_0235at 231.392 kb on - strand, within Synpcc7942_0235at 231.476 kb on + strand, within Synpcc7942_0235at 231.484 kb on - strand, within Synpcc7942_0235at 231.484 kb on - strand, within Synpcc7942_0235at 231.496 kb on - strand, within Synpcc7942_0235at 231.514 kb on + strand, within Synpcc7942_0235at 231.536 kb on + strand, within Synpcc7942_0235at 231.566 kb on - strand, within Synpcc7942_0235at 231.566 kb on - strand, within Synpcc7942_0235at 231.570 kb on + strand, within Synpcc7942_0235at 231.626 kb on - strandat 231.662 kb on - strandat 231.734 kb on + strandat 231.802 kb on + strandat 231.802 kb on + strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.810 kb on - strandat 231.842 kb on - strandat 231.871 kb on + strandat 231.977 kb on + strandat 232.000 kb on + strandat 232.135 kb on + strand, within Synpcc7942_0236

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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229,320 + +0.7
229,400 + -2.2
229,463 - +0.1
229,564 - -4.4
229,684 - Synpcc7942_0233 0.13 +0.1
229,796 + Synpcc7942_0233 0.39 +0.4
229,949 + Synpcc7942_0233 0.75 -1.0
229,957 - Synpcc7942_0233 0.77 -0.0
229,991 + Synpcc7942_0233 0.85 +1.5
229,991 + Synpcc7942_0233 0.85 +1.4
229,996 + Synpcc7942_0233 0.86 +1.0
230,021 - +1.3
230,075 + -2.0
230,080 + +1.3
230,083 - +2.8
230,083 - -0.5
230,106 - -0.9
230,114 + -2.9
230,114 + -2.3
230,114 + -2.4
230,122 + +1.1
230,123 - +0.1
230,123 - -2.3
230,155 + -0.6
230,165 + -0.0
230,177 + -0.1
230,187 - +0.5
230,220 + +0.3
230,241 + -3.3
230,242 + -0.6
230,249 + -0.3
230,266 + Synpcc7942_0234 0.11 -0.4
230,267 + Synpcc7942_0234 0.11 +1.4
230,274 - Synpcc7942_0234 0.12 -2.3
230,274 - Synpcc7942_0234 0.12 -1.8
230,301 - Synpcc7942_0234 0.14 +0.4
230,321 + Synpcc7942_0234 0.16 +0.1
230,324 - Synpcc7942_0234 0.17 -1.9
230,333 + -0.4
230,333 + Synpcc7942_0234 0.18 -0.0
230,333 + Synpcc7942_0234 0.18 -0.4
230,333 + Synpcc7942_0234 0.18 -2.4
230,341 - Synpcc7942_0234 0.18 +0.1
230,389 - Synpcc7942_0234 0.23 -1.5
230,389 - Synpcc7942_0234 0.23 -0.0
230,389 - Synpcc7942_0234 0.23 +0.8
230,389 - Synpcc7942_0234 0.23 +0.6
230,389 - Synpcc7942_0234 0.23 +1.2
230,389 - Synpcc7942_0234 0.23 -0.8
230,389 - Synpcc7942_0234 0.23 +0.0
230,458 - Synpcc7942_0234 0.30 +0.2
230,458 - Synpcc7942_0234 0.30 -3.5
230,459 + Synpcc7942_0234 0.30 -0.4
230,466 - Synpcc7942_0234 0.31 +2.1
230,467 - Synpcc7942_0234 0.31 -0.3
230,467 - Synpcc7942_0234 0.31 -0.6
230,467 - Synpcc7942_0234 0.31 -0.7
230,474 + Synpcc7942_0234 0.32 -0.7
230,476 + Synpcc7942_0234 0.32 -0.4
230,477 - Synpcc7942_0234 0.32 +1.7
230,478 - Synpcc7942_0234 0.32 -3.8
230,484 + Synpcc7942_0234 0.33 -1.2
230,494 + Synpcc7942_0234 0.34 +0.7
230,495 + Synpcc7942_0234 0.34 +1.6
230,495 + Synpcc7942_0234 0.34 -0.1
230,495 + Synpcc7942_0234 0.34 -1.2
230,497 - Synpcc7942_0234 0.34 -0.8
230,505 + Synpcc7942_0234 0.35 +0.6
230,505 + Synpcc7942_0234 0.35 +0.8
230,505 + Synpcc7942_0234 0.35 +0.2
230,505 + Synpcc7942_0234 0.35 -2.1
230,505 + Synpcc7942_0234 0.35 +0.3
230,505 + Synpcc7942_0234 0.35 -1.1
230,505 + Synpcc7942_0234 0.35 +2.0
230,505 + Synpcc7942_0234 0.35 +2.6
230,505 + Synpcc7942_0234 0.35 -0.1
230,505 + Synpcc7942_0234 0.35 +1.4
230,505 + Synpcc7942_0234 0.35 +0.7
230,505 + Synpcc7942_0234 0.35 -3.5
230,505 + Synpcc7942_0234 0.35 -0.1
230,513 - Synpcc7942_0234 0.36 -1.1
230,513 - Synpcc7942_0234 0.36 +0.1
230,513 - Synpcc7942_0234 0.36 +1.0
230,513 - Synpcc7942_0234 0.36 -2.7
230,513 - Synpcc7942_0234 0.36 +0.3
230,513 - Synpcc7942_0234 0.36 -0.0
230,513 - Synpcc7942_0234 0.36 -3.1
230,513 - Synpcc7942_0234 0.36 -1.0
230,513 - Synpcc7942_0234 0.36 +0.6
230,513 - Synpcc7942_0234 0.36 +2.9
230,513 - Synpcc7942_0234 0.36 +0.3
230,532 - Synpcc7942_0234 0.38 -0.2
230,574 + Synpcc7942_0234 0.42 +1.6
230,574 + Synpcc7942_0234 0.42 -3.5
230,582 - Synpcc7942_0234 0.43 -2.0
230,582 - Synpcc7942_0234 0.43 -0.5
230,582 - Synpcc7942_0234 0.43 +0.9
230,593 - Synpcc7942_0234 0.44 +0.5
230,614 + Synpcc7942_0234 0.46 +1.8
230,615 + Synpcc7942_0234 0.46 -0.9
230,622 - Synpcc7942_0234 0.47 -0.1
230,623 - Synpcc7942_0234 0.47 -1.6
230,652 + Synpcc7942_0234 0.50 +2.3
230,658 + Synpcc7942_0234 0.50 -0.8
230,658 + Synpcc7942_0234 0.50 -0.0
230,661 - Synpcc7942_0234 0.51 -1.7
230,666 - Synpcc7942_0234 0.51 +1.1
230,666 - Synpcc7942_0234 0.51 +0.8
230,667 + Synpcc7942_0234 0.51 -2.1
230,669 + Synpcc7942_0234 0.51 +0.1
230,669 + Synpcc7942_0234 0.51 -1.2
230,677 - Synpcc7942_0234 0.52 +1.8
230,691 + Synpcc7942_0234 0.54 -2.9
230,701 + Synpcc7942_0234 0.55 +0.6
230,716 - Synpcc7942_0234 0.56 +0.9
230,721 + Synpcc7942_0234 0.57 +1.9
230,724 + Synpcc7942_0234 0.57 +0.8
230,724 + Synpcc7942_0234 0.57 -0.1
230,724 + Synpcc7942_0234 0.57 +1.6
230,724 + Synpcc7942_0234 0.57 +1.5
230,724 + Synpcc7942_0234 0.57 +1.0
230,724 + Synpcc7942_0234 0.57 +0.5
230,796 + Synpcc7942_0234 0.64 -0.5
230,796 + Synpcc7942_0234 0.64 -3.6
230,799 - Synpcc7942_0234 0.65 +1.1
230,809 - Synpcc7942_0234 0.66 -1.2
230,809 - Synpcc7942_0234 0.66 +1.0
230,821 - Synpcc7942_0234 0.67 +0.8
230,835 + Synpcc7942_0234 0.68 +0.7
230,848 - Synpcc7942_0234 0.69 +0.6
230,854 - Synpcc7942_0234 0.70 -2.2
230,858 + Synpcc7942_0234 0.70 -1.3
230,860 + Synpcc7942_0234 0.71 -0.3
230,866 - Synpcc7942_0234 0.71 +0.5
230,866 - Synpcc7942_0234 0.71 +1.3
230,868 - Synpcc7942_0234 0.72 +2.4
230,879 - Synpcc7942_0234 0.73 +1.8
230,885 + Synpcc7942_0234 0.73 -1.4
230,885 + Synpcc7942_0234 0.73 -3.3
230,890 - Synpcc7942_0234 0.74 +1.4
230,893 - Synpcc7942_0234 0.74 +1.7
230,893 - Synpcc7942_0234 0.74 +1.3
230,893 - Synpcc7942_0234 0.74 -0.6
230,902 + Synpcc7942_0234 0.75 +1.2
230,925 + Synpcc7942_0234 0.77 -2.4
230,933 - Synpcc7942_0234 0.78 -0.2
230,936 + Synpcc7942_0234 0.78 -2.5
230,944 + Synpcc7942_0234 0.79 -0.8
230,959 + Synpcc7942_0234 0.81 +1.0
230,959 + Synpcc7942_0234 0.81 -1.1
230,959 + Synpcc7942_0234 0.81 -0.1
230,961 - Synpcc7942_0234 0.81 -2.8
230,967 - Synpcc7942_0234 0.81 -1.1
230,985 + Synpcc7942_0234 0.83 +0.4
230,985 + Synpcc7942_0234 0.83 -1.4
231,003 + Synpcc7942_0234 0.85 -0.2
231,011 - Synpcc7942_0234 0.86 -1.0
231,014 + Synpcc7942_0234 0.86 +0.8
231,014 + Synpcc7942_0234 0.86 -0.8
231,014 + Synpcc7942_0234 0.86 +1.8
231,059 + +0.4
231,083 + -2.0
231,088 - -1.3
231,127 + +2.0
231,130 + +1.5
231,130 + +0.4
231,130 + +2.4
231,138 - -0.9
231,138 - +0.4
231,170 + +0.3
231,203 - +0.7
231,205 - -0.7
231,205 - +0.3
231,218 - Synpcc7942_0235 0.11 +1.1
231,227 - Synpcc7942_0235 0.13 -0.3
231,233 + Synpcc7942_0235 0.14 +1.1
231,241 - Synpcc7942_0235 0.15 -1.7
231,246 + Synpcc7942_0235 0.16 +0.2
231,251 - Synpcc7942_0235 0.17 +0.1
231,256 + Synpcc7942_0235 0.18 -2.6
231,256 + Synpcc7942_0235 0.18 -1.8
231,256 + Synpcc7942_0235 0.18 +0.8
231,262 + Synpcc7942_0235 0.19 -0.2
231,287 - Synpcc7942_0235 0.24 -2.2
231,312 - Synpcc7942_0235 0.29 +0.6
231,322 - Synpcc7942_0235 0.31 +1.0
231,347 + Synpcc7942_0235 0.36 +0.5
231,359 - Synpcc7942_0235 0.38 -0.0
231,380 - Synpcc7942_0235 0.42 +0.6
231,384 + Synpcc7942_0235 0.43 +0.5
231,392 - Synpcc7942_0235 0.45 +1.4
231,476 + Synpcc7942_0235 0.61 +1.7
231,484 - Synpcc7942_0235 0.62 -1.7
231,484 - Synpcc7942_0235 0.62 +0.3
231,496 - Synpcc7942_0235 0.65 +0.6
231,514 + Synpcc7942_0235 0.68 -0.2
231,536 + Synpcc7942_0235 0.72 +1.1
231,566 - Synpcc7942_0235 0.78 -0.1
231,566 - Synpcc7942_0235 0.78 +0.6
231,570 + Synpcc7942_0235 0.79 +1.0
231,626 - -1.3
231,662 - +1.3
231,734 + +1.8
231,802 + -1.1
231,802 + +0.4
231,810 - -3.9
231,810 - +0.4
231,810 - +0.5
231,810 - +0.4
231,842 - -4.4
231,871 + +1.3
231,977 + -4.0
232,000 + +0.8
232,135 + Synpcc7942_0236 0.22 -0.4

Or see this region's nucleotide sequence