Experiment: R2A with Fusidic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24185 and CA265_RS24190 are separated by 2 nucleotides CA265_RS24190 and CA265_RS24195 are separated by 78 nucleotides CA265_RS24195 and CA265_RS24200 are separated by 167 nucleotides
CA265_RS24185: CA265_RS24185 - efflux transporter periplasmic adaptor subunit, at 5,892,917 to 5,893,984
_RS24185
CA265_RS24190: CA265_RS24190 - transporter, at 5,893,987 to 5,895,327
_RS24190
CA265_RS24195: CA265_RS24195 - TetR family transcriptional regulator, at 5,895,406 to 5,896,017
_RS24195
CA265_RS24200: CA265_RS24200 - fatty acid hydroxylase, at 5,896,185 to 5,896,628
_RS24200
Position (kb) 5893
5894
5895
5896 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 5893.022 kb on + strand at 5893.060 kb on + strand, within CA265_RS24185 at 5893.060 kb on + strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.067 kb on - strand, within CA265_RS24185 at 5893.120 kb on + strand, within CA265_RS24185 at 5893.121 kb on - strand, within CA265_RS24185 at 5893.160 kb on - strand, within CA265_RS24185 at 5893.176 kb on + strand, within CA265_RS24185 at 5893.177 kb on - strand, within CA265_RS24185 at 5893.289 kb on - strand, within CA265_RS24185 at 5893.406 kb on + strand, within CA265_RS24185 at 5893.474 kb on + strand, within CA265_RS24185 at 5893.486 kb on + strand, within CA265_RS24185 at 5893.490 kb on - strand, within CA265_RS24185 at 5893.552 kb on + strand, within CA265_RS24185 at 5893.623 kb on - strand, within CA265_RS24185 at 5893.636 kb on - strand, within CA265_RS24185 at 5893.731 kb on + strand, within CA265_RS24185 at 5893.731 kb on + strand, within CA265_RS24185 at 5893.732 kb on - strand, within CA265_RS24185 at 5893.764 kb on - strand, within CA265_RS24185 at 5893.771 kb on + strand, within CA265_RS24185 at 5893.772 kb on - strand, within CA265_RS24185 at 5893.919 kb on + strand at 5893.919 kb on + strand at 5893.926 kb on + strand at 5893.931 kb on + strand at 5893.932 kb on - strand at 5893.955 kb on + strand at 5893.955 kb on + strand at 5893.956 kb on - strand at 5893.969 kb on + strand at 5893.970 kb on - strand at 5893.970 kb on - strand at 5893.970 kb on - strand at 5893.989 kb on - strand at 5894.005 kb on - strand at 5894.027 kb on - strand at 5894.056 kb on + strand at 5894.069 kb on + strand at 5894.088 kb on + strand at 5894.088 kb on + strand at 5894.089 kb on - strand at 5894.089 kb on - strand at 5894.089 kb on - strand at 5894.163 kb on - strand, within CA265_RS24190 at 5894.177 kb on - strand, within CA265_RS24190 at 5894.212 kb on + strand, within CA265_RS24190 at 5894.213 kb on - strand, within CA265_RS24190 at 5894.224 kb on + strand, within CA265_RS24190 at 5894.363 kb on - strand, within CA265_RS24190 at 5894.447 kb on + strand, within CA265_RS24190 at 5894.448 kb on - strand, within CA265_RS24190 at 5894.492 kb on - strand, within CA265_RS24190 at 5894.496 kb on - strand, within CA265_RS24190 at 5894.580 kb on + strand, within CA265_RS24190 at 5894.584 kb on + strand, within CA265_RS24190 at 5894.585 kb on - strand, within CA265_RS24190 at 5894.595 kb on + strand, within CA265_RS24190 at 5894.595 kb on + strand, within CA265_RS24190 at 5894.729 kb on - strand, within CA265_RS24190 at 5894.739 kb on + strand, within CA265_RS24190 at 5894.768 kb on - strand, within CA265_RS24190 at 5894.812 kb on - strand, within CA265_RS24190 at 5894.829 kb on + strand, within CA265_RS24190 at 5894.874 kb on - strand, within CA265_RS24190 at 5894.874 kb on - strand, within CA265_RS24190 at 5894.874 kb on - strand, within CA265_RS24190 at 5894.922 kb on + strand, within CA265_RS24190 at 5894.930 kb on + strand, within CA265_RS24190 at 5894.930 kb on + strand, within CA265_RS24190 at 5895.085 kb on - strand, within CA265_RS24190 at 5895.095 kb on + strand, within CA265_RS24190 at 5895.096 kb on - strand, within CA265_RS24190 at 5895.096 kb on - strand, within CA265_RS24190 at 5895.142 kb on + strand, within CA265_RS24190 at 5895.143 kb on - strand, within CA265_RS24190 at 5895.219 kb on - strand at 5895.240 kb on + strand at 5895.291 kb on + strand at 5895.292 kb on + strand at 5895.332 kb on + strand at 5895.332 kb on + strand at 5895.356 kb on + strand at 5895.356 kb on + strand at 5895.356 kb on + strand at 5895.357 kb on - strand at 5895.360 kb on + strand at 5895.361 kb on - strand at 5895.437 kb on - strand at 5895.471 kb on + strand, within CA265_RS24195 at 5895.472 kb on - strand, within CA265_RS24195 at 5895.517 kb on - strand, within CA265_RS24195 at 5895.520 kb on - strand, within CA265_RS24195 at 5895.661 kb on + strand, within CA265_RS24195 at 5895.662 kb on - strand, within CA265_RS24195 at 5895.662 kb on - strand, within CA265_RS24195 at 5895.700 kb on + strand, within CA265_RS24195 at 5895.726 kb on - strand, within CA265_RS24195 at 5895.728 kb on + strand, within CA265_RS24195 at 5895.800 kb on + strand, within CA265_RS24195 at 5895.856 kb on - strand, within CA265_RS24195 at 5895.860 kb on - strand, within CA265_RS24195 at 5895.881 kb on + strand, within CA265_RS24195 at 5895.923 kb on - strand, within CA265_RS24195 at 5895.943 kb on - strand, within CA265_RS24195 at 5895.972 kb on + strand at 5896.152 kb on + strand at 5896.152 kb on + strand at 5896.155 kb on - strand at 5896.157 kb on - strand at 5896.253 kb on + strand, within CA265_RS24200 at 5896.289 kb on + strand, within CA265_RS24200
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusidic 0.001 mg/ml remove 5,893,022 + -2.1 5,893,060 + CA265_RS24185 0.13 -5.2 5,893,060 + CA265_RS24185 0.13 -2.0 5,893,061 - CA265_RS24185 0.13 -1.7 5,893,061 - CA265_RS24185 0.13 -3.8 5,893,061 - CA265_RS24185 0.13 -4.4 5,893,067 - CA265_RS24185 0.14 -2.9 5,893,120 + CA265_RS24185 0.19 -2.7 5,893,121 - CA265_RS24185 0.19 -0.0 5,893,160 - CA265_RS24185 0.23 -3.1 5,893,176 + CA265_RS24185 0.24 -3.6 5,893,177 - CA265_RS24185 0.24 -1.9 5,893,289 - CA265_RS24185 0.35 -4.1 5,893,406 + CA265_RS24185 0.46 -2.4 5,893,474 + CA265_RS24185 0.52 -3.1 5,893,486 + CA265_RS24185 0.53 -3.4 5,893,490 - CA265_RS24185 0.54 -3.4 5,893,552 + CA265_RS24185 0.59 -6.1 5,893,623 - CA265_RS24185 0.66 -2.1 5,893,636 - CA265_RS24185 0.67 -3.4 5,893,731 + CA265_RS24185 0.76 -4.2 5,893,731 + CA265_RS24185 0.76 -3.5 5,893,732 - CA265_RS24185 0.76 -3.3 5,893,764 - CA265_RS24185 0.79 -3.2 5,893,771 + CA265_RS24185 0.80 -5.1 5,893,772 - CA265_RS24185 0.80 -1.6 5,893,919 + -3.2 5,893,919 + -2.0 5,893,926 + -3.3 5,893,931 + -2.9 5,893,932 - -4.5 5,893,955 + -3.3 5,893,955 + -2.0 5,893,956 - -4.7 5,893,969 + -1.9 5,893,970 - -5.1 5,893,970 - -3.1 5,893,970 - -2.9 5,893,989 - -2.3 5,894,005 - -2.1 5,894,027 - -3.3 5,894,056 + -5.1 5,894,069 + -2.5 5,894,088 + -2.8 5,894,088 + -3.7 5,894,089 - -2.9 5,894,089 - -3.6 5,894,089 - -4.3 5,894,163 - CA265_RS24190 0.13 -2.0 5,894,177 - CA265_RS24190 0.14 -2.6 5,894,212 + CA265_RS24190 0.17 -3.9 5,894,213 - CA265_RS24190 0.17 -3.7 5,894,224 + CA265_RS24190 0.18 -4.1 5,894,363 - CA265_RS24190 0.28 -3.8 5,894,447 + CA265_RS24190 0.34 -2.9 5,894,448 - CA265_RS24190 0.34 -3.6 5,894,492 - CA265_RS24190 0.38 -3.6 5,894,496 - CA265_RS24190 0.38 -0.9 5,894,580 + CA265_RS24190 0.44 -4.6 5,894,584 + CA265_RS24190 0.45 -3.4 5,894,585 - CA265_RS24190 0.45 -2.0 5,894,595 + CA265_RS24190 0.45 -3.8 5,894,595 + CA265_RS24190 0.45 -3.6 5,894,729 - CA265_RS24190 0.55 -0.1 5,894,739 + CA265_RS24190 0.56 -3.2 5,894,768 - CA265_RS24190 0.58 -1.3 5,894,812 - CA265_RS24190 0.62 -2.3 5,894,829 + CA265_RS24190 0.63 -3.1 5,894,874 - CA265_RS24190 0.66 +0.6 5,894,874 - CA265_RS24190 0.66 -1.8 5,894,874 - CA265_RS24190 0.66 -4.4 5,894,922 + CA265_RS24190 0.70 -1.3 5,894,930 + CA265_RS24190 0.70 -1.4 5,894,930 + CA265_RS24190 0.70 -2.6 5,895,085 - CA265_RS24190 0.82 -1.6 5,895,095 + CA265_RS24190 0.83 -2.3 5,895,096 - CA265_RS24190 0.83 -4.0 5,895,096 - CA265_RS24190 0.83 -3.2 5,895,142 + CA265_RS24190 0.86 -4.5 5,895,143 - CA265_RS24190 0.86 -2.6 5,895,219 - -4.0 5,895,240 + -1.4 5,895,291 + -1.8 5,895,292 + -3.5 5,895,332 + -4.1 5,895,332 + -3.8 5,895,356 + -3.2 5,895,356 + +1.4 5,895,356 + -1.7 5,895,357 - +6.5 5,895,360 + -3.6 5,895,361 - +6.5 5,895,437 - +7.3 5,895,471 + CA265_RS24195 0.11 -1.3 5,895,472 - CA265_RS24195 0.11 +7.9 5,895,517 - CA265_RS24195 0.18 +7.6 5,895,520 - CA265_RS24195 0.19 +7.3 5,895,661 + CA265_RS24195 0.42 -1.2 5,895,662 - CA265_RS24195 0.42 +6.9 5,895,662 - CA265_RS24195 0.42 +6.8 5,895,700 + CA265_RS24195 0.48 -2.8 5,895,726 - CA265_RS24195 0.52 +7.3 5,895,728 + CA265_RS24195 0.53 -1.1 5,895,800 + CA265_RS24195 0.64 -1.1 5,895,856 - CA265_RS24195 0.74 +7.1 5,895,860 - CA265_RS24195 0.74 +7.1 5,895,881 + CA265_RS24195 0.78 -2.0 5,895,923 - CA265_RS24195 0.84 +6.5 5,895,943 - CA265_RS24195 0.88 +7.0 5,895,972 + -2.4 5,896,152 + +0.4 5,896,152 + +1.4 5,896,155 - +6.0 5,896,157 - +7.1 5,896,253 + CA265_RS24200 0.15 +0.4 5,896,289 + CA265_RS24200 0.23 +1.0
Or see this region's nucleotide sequence