Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1013

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_R0032 and Shewana3_R0033 are separated by 47 nucleotidesShewana3_R0033 and Shewana3_R0034 are separated by 22 nucleotidesShewana3_R0034 and Shewana3_R0035 are separated by 1 nucleotidesShewana3_R0035 and Shewana3_R0036 are separated by 83 nucleotidesShewana3_R0036 and Shewana3_R0037 are separated by 36 nucleotidesShewana3_R0037 and Shewana3_1013 are separated by 288 nucleotidesShewana3_1013 and Shewana3_1014 are separated by 483 nucleotides Shewana3_R0032: Shewana3_R0032 - tRNA-Leu (RefSeq), at 1,184,307 to 1,184,391 _R0032 Shewana3_R0033: Shewana3_R0033 - tRNA-Gln (RefSeq), at 1,184,439 to 1,184,513 _R0033 Shewana3_R0034: Shewana3_R0034 - tRNA-Gln (RefSeq), at 1,184,536 to 1,184,610 _R0034 Shewana3_R0035: Shewana3_R0035 - tRNA-Met (RefSeq), at 1,184,612 to 1,184,688 _R0035 Shewana3_R0036: Shewana3_R0036 - tRNA-Leu (RefSeq), at 1,184,772 to 1,184,856 _R0036 Shewana3_R0037: Shewana3_R0037 - tRNA-Gln (RefSeq), at 1,184,893 to 1,184,967 _R0037 Shewana3_1013: Shewana3_1013 - hypothetical protein (RefSeq), at 1,185,256 to 1,185,891 _1013 Shewana3_1014: Shewana3_1014 - hypothetical protein (RefSeq), at 1,186,375 to 1,186,908 _1014 Position (kb) 1185 1186Strain fitness (log2 ratio) -2 -1 0 1at 1185.324 kb on - strand, within Shewana3_1013at 1185.393 kb on - strand, within Shewana3_1013at 1185.623 kb on - strand, within Shewana3_1013at 1185.863 kb on - strandat 1185.911 kb on - strandat 1185.943 kb on - strandat 1186.031 kb on + strandat 1186.420 kb on + strandat 1186.520 kb on - strand, within Shewana3_1014at 1186.646 kb on + strand, within Shewana3_1014at 1186.646 kb on + strand, within Shewana3_1014at 1186.654 kb on - strand, within Shewana3_1014at 1186.654 kb on - strand, within Shewana3_1014at 1186.707 kb on + strand, within Shewana3_1014at 1186.748 kb on + strand, within Shewana3_1014at 1186.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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1,185,324 - Shewana3_1013 0.11 -0.1
1,185,393 - Shewana3_1013 0.22 +0.7
1,185,623 - Shewana3_1013 0.58 +1.4
1,185,863 - -1.4
1,185,911 - -0.0
1,185,943 - -0.1
1,186,031 + -2.0
1,186,420 + +0.5
1,186,520 - Shewana3_1014 0.27 +0.7
1,186,646 + Shewana3_1014 0.51 +0.4
1,186,646 + Shewana3_1014 0.51 -0.2
1,186,654 - Shewana3_1014 0.52 +0.5
1,186,654 - Shewana3_1014 0.52 +0.5
1,186,707 + Shewana3_1014 0.62 -0.9
1,186,748 + Shewana3_1014 0.70 +0.7
1,186,890 + +0.3

Or see this region's nucleotide sequence