Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28210

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28200 and AO353_28205 are separated by 63 nucleotidesAO353_28205 and AO353_28210 are separated by 45 nucleotidesAO353_28210 and AO353_28215 are separated by 95 nucleotides AO353_28200: AO353_28200 - ribosomal protein S3AE, at 6,147,515 to 6,147,916 _28200 AO353_28205: AO353_28205 - AsnC family transcriptional regulator, at 6,147,980 to 6,148,468 _28205 AO353_28210: AO353_28210 - 2-haloalkanoic acid dehalogenase, at 6,148,514 to 6,149,170 _28210 AO353_28215: AO353_28215 - 4-aminobutyrate aminotransferase, at 6,149,266 to 6,150,558 _28215 Position (kb) 6148 6149 6150Strain fitness (log2 ratio) -3 -2 -1 0 1at 6147.591 kb on + strand, within AO353_28200at 6147.592 kb on - strand, within AO353_28200at 6147.592 kb on - strand, within AO353_28200at 6147.707 kb on + strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strand, within AO353_28200at 6147.708 kb on - strandat 6147.717 kb on + strand, within AO353_28200at 6147.718 kb on - strand, within AO353_28200at 6147.778 kb on + strand, within AO353_28200at 6147.876 kb on - strandat 6147.920 kb on - strandat 6147.920 kb on - strandat 6148.044 kb on + strand, within AO353_28205at 6148.044 kb on + strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.045 kb on - strand, within AO353_28205at 6148.053 kb on + strand, within AO353_28205at 6148.105 kb on - strand, within AO353_28205at 6148.140 kb on + strand, within AO353_28205at 6148.141 kb on - strand, within AO353_28205at 6148.141 kb on - strand, within AO353_28205at 6148.302 kb on + strand, within AO353_28205at 6148.302 kb on + strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.303 kb on - strand, within AO353_28205at 6148.457 kb on + strandat 6148.458 kb on - strandat 6148.473 kb on + strandat 6148.473 kb on + strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.474 kb on - strandat 6148.493 kb on + strandat 6148.572 kb on + strandat 6148.572 kb on + strandat 6148.704 kb on - strand, within AO353_28210at 6148.827 kb on + strand, within AO353_28210at 6148.828 kb on - strand, within AO353_28210at 6148.842 kb on + strand, within AO353_28210at 6148.843 kb on - strand, within AO353_28210at 6148.843 kb on - strand, within AO353_28210at 6149.039 kb on + strand, within AO353_28210at 6149.039 kb on + strand, within AO353_28210at 6149.039 kb on + strand, within AO353_28210at 6149.190 kb on - strandat 6149.190 kb on - strandat 6149.216 kb on + strandat 6149.217 kb on - strandat 6149.217 kb on - strandat 6149.217 kb on - strandat 6149.233 kb on + strandat 6149.603 kb on + strand, within AO353_28215at 6149.604 kb on - strand, within AO353_28215at 6149.604 kb on - strand, within AO353_28215at 6149.654 kb on + strand, within AO353_28215at 6149.654 kb on + strand, within AO353_28215at 6149.725 kb on + strand, within AO353_28215at 6149.725 kb on + strand, within AO353_28215at 6149.726 kb on - strand, within AO353_28215at 6150.083 kb on + strand, within AO353_28215at 6150.084 kb on - strand, within AO353_28215at 6150.084 kb on - strand, within AO353_28215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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6,147,591 + AO353_28200 0.19 -1.2
6,147,592 - AO353_28200 0.19 -0.2
6,147,592 - AO353_28200 0.19 +0.1
6,147,707 + AO353_28200 0.48 -1.8
6,147,708 - AO353_28200 0.48 +0.6
6,147,708 - AO353_28200 0.48 +1.1
6,147,708 - AO353_28200 0.48 +0.5
6,147,708 - AO353_28200 0.48 +0.3
6,147,708 - +0.1
6,147,717 + AO353_28200 0.50 -0.4
6,147,718 - AO353_28200 0.50 -0.8
6,147,778 + AO353_28200 0.65 -0.1
6,147,876 - +1.3
6,147,920 - -0.9
6,147,920 - +0.4
6,148,044 + AO353_28205 0.13 -0.5
6,148,044 + AO353_28205 0.13 -1.7
6,148,045 - AO353_28205 0.13 +0.9
6,148,045 - AO353_28205 0.13 -1.0
6,148,045 - AO353_28205 0.13 -0.8
6,148,045 - AO353_28205 0.13 -0.1
6,148,053 + AO353_28205 0.15 +0.6
6,148,105 - AO353_28205 0.26 +0.3
6,148,140 + AO353_28205 0.33 -0.2
6,148,141 - AO353_28205 0.33 +0.6
6,148,141 - AO353_28205 0.33 -0.4
6,148,302 + AO353_28205 0.66 -0.7
6,148,302 + AO353_28205 0.66 -0.4
6,148,303 - AO353_28205 0.66 +0.6
6,148,303 - AO353_28205 0.66 +1.6
6,148,303 - AO353_28205 0.66 +0.6
6,148,303 - AO353_28205 0.66 +0.0
6,148,457 + -0.7
6,148,458 - -1.8
6,148,473 + +0.5
6,148,473 + -1.4
6,148,474 - -1.0
6,148,474 - -0.4
6,148,474 - +0.3
6,148,474 - +1.0
6,148,493 + +0.0
6,148,572 + -3.0
6,148,572 + -1.4
6,148,704 - AO353_28210 0.29 +0.6
6,148,827 + AO353_28210 0.48 -0.8
6,148,828 - AO353_28210 0.48 +0.8
6,148,842 + AO353_28210 0.50 +1.2
6,148,843 - AO353_28210 0.50 +0.3
6,148,843 - AO353_28210 0.50 +0.1
6,149,039 + AO353_28210 0.80 +0.8
6,149,039 + AO353_28210 0.80 +0.6
6,149,039 + AO353_28210 0.80 +0.6
6,149,190 - -0.9
6,149,190 - -0.7
6,149,216 + -0.2
6,149,217 - -1.2
6,149,217 - -0.8
6,149,217 - -0.5
6,149,233 + +0.2
6,149,603 + AO353_28215 0.26 -0.1
6,149,604 - AO353_28215 0.26 -0.9
6,149,604 - AO353_28215 0.26 -0.9
6,149,654 + AO353_28215 0.30 -0.8
6,149,654 + AO353_28215 0.30 -1.5
6,149,725 + AO353_28215 0.35 -1.2
6,149,725 + AO353_28215 0.35 -0.1
6,149,726 - AO353_28215 0.36 -0.4
6,150,083 + AO353_28215 0.63 +0.4
6,150,084 - AO353_28215 0.63 +0.4
6,150,084 - AO353_28215 0.63 +0.7

Or see this region's nucleotide sequence