Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_28200 and AO353_28205 are separated by 63 nucleotides AO353_28205 and AO353_28210 are separated by 45 nucleotides AO353_28210 and AO353_28215 are separated by 95 nucleotides
AO353_28200: AO353_28200 - ribosomal protein S3AE, at 6,147,515 to 6,147,916
_28200
AO353_28205: AO353_28205 - AsnC family transcriptional regulator, at 6,147,980 to 6,148,468
_28205
AO353_28210: AO353_28210 - 2-haloalkanoic acid dehalogenase, at 6,148,514 to 6,149,170
_28210
AO353_28215: AO353_28215 - 4-aminobutyrate aminotransferase, at 6,149,266 to 6,150,558
_28215
Position (kb)
6148
6149
6150 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6147.591 kb on + strand, within AO353_28200 at 6147.592 kb on - strand, within AO353_28200 at 6147.592 kb on - strand, within AO353_28200 at 6147.707 kb on + strand, within AO353_28200 at 6147.708 kb on - strand, within AO353_28200 at 6147.708 kb on - strand, within AO353_28200 at 6147.708 kb on - strand, within AO353_28200 at 6147.708 kb on - strand, within AO353_28200 at 6147.708 kb on - strand at 6147.717 kb on + strand, within AO353_28200 at 6147.718 kb on - strand, within AO353_28200 at 6147.778 kb on + strand, within AO353_28200 at 6147.876 kb on - strand at 6147.920 kb on - strand at 6147.920 kb on - strand at 6148.044 kb on + strand, within AO353_28205 at 6148.044 kb on + strand, within AO353_28205 at 6148.045 kb on - strand, within AO353_28205 at 6148.045 kb on - strand, within AO353_28205 at 6148.045 kb on - strand, within AO353_28205 at 6148.045 kb on - strand, within AO353_28205 at 6148.053 kb on + strand, within AO353_28205 at 6148.105 kb on - strand, within AO353_28205 at 6148.140 kb on + strand, within AO353_28205 at 6148.141 kb on - strand, within AO353_28205 at 6148.141 kb on - strand, within AO353_28205 at 6148.302 kb on + strand, within AO353_28205 at 6148.302 kb on + strand, within AO353_28205 at 6148.303 kb on - strand, within AO353_28205 at 6148.303 kb on - strand, within AO353_28205 at 6148.303 kb on - strand, within AO353_28205 at 6148.303 kb on - strand, within AO353_28205 at 6148.457 kb on + strand at 6148.458 kb on - strand at 6148.473 kb on + strand at 6148.473 kb on + strand at 6148.474 kb on - strand at 6148.474 kb on - strand at 6148.474 kb on - strand at 6148.474 kb on - strand at 6148.493 kb on + strand at 6148.572 kb on + strand at 6148.572 kb on + strand at 6148.704 kb on - strand, within AO353_28210 at 6148.827 kb on + strand, within AO353_28210 at 6148.828 kb on - strand, within AO353_28210 at 6148.842 kb on + strand, within AO353_28210 at 6148.843 kb on - strand, within AO353_28210 at 6148.843 kb on - strand, within AO353_28210 at 6149.039 kb on + strand, within AO353_28210 at 6149.039 kb on + strand, within AO353_28210 at 6149.039 kb on + strand, within AO353_28210 at 6149.190 kb on - strand at 6149.190 kb on - strand at 6149.216 kb on + strand at 6149.217 kb on - strand at 6149.217 kb on - strand at 6149.217 kb on - strand at 6149.233 kb on + strand at 6149.603 kb on + strand, within AO353_28215 at 6149.604 kb on - strand, within AO353_28215 at 6149.604 kb on - strand, within AO353_28215 at 6149.654 kb on + strand, within AO353_28215 at 6149.654 kb on + strand, within AO353_28215 at 6149.725 kb on + strand, within AO353_28215 at 6149.725 kb on + strand, within AO353_28215 at 6149.726 kb on - strand, within AO353_28215 at 6150.083 kb on + strand, within AO353_28215 at 6150.084 kb on - strand, within AO353_28215 at 6150.084 kb on - strand, within AO353_28215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 6,147,591 + AO353_28200 0.19 -1.2 6,147,592 - AO353_28200 0.19 -0.2 6,147,592 - AO353_28200 0.19 +0.1 6,147,707 + AO353_28200 0.48 -1.8 6,147,708 - AO353_28200 0.48 +0.6 6,147,708 - AO353_28200 0.48 +1.1 6,147,708 - AO353_28200 0.48 +0.5 6,147,708 - AO353_28200 0.48 +0.3 6,147,708 - +0.1 6,147,717 + AO353_28200 0.50 -0.4 6,147,718 - AO353_28200 0.50 -0.8 6,147,778 + AO353_28200 0.65 -0.1 6,147,876 - +1.3 6,147,920 - -0.9 6,147,920 - +0.4 6,148,044 + AO353_28205 0.13 -0.5 6,148,044 + AO353_28205 0.13 -1.7 6,148,045 - AO353_28205 0.13 +0.9 6,148,045 - AO353_28205 0.13 -1.0 6,148,045 - AO353_28205 0.13 -0.8 6,148,045 - AO353_28205 0.13 -0.1 6,148,053 + AO353_28205 0.15 +0.6 6,148,105 - AO353_28205 0.26 +0.3 6,148,140 + AO353_28205 0.33 -0.2 6,148,141 - AO353_28205 0.33 +0.6 6,148,141 - AO353_28205 0.33 -0.4 6,148,302 + AO353_28205 0.66 -0.7 6,148,302 + AO353_28205 0.66 -0.4 6,148,303 - AO353_28205 0.66 +0.6 6,148,303 - AO353_28205 0.66 +1.6 6,148,303 - AO353_28205 0.66 +0.6 6,148,303 - AO353_28205 0.66 +0.0 6,148,457 + -0.7 6,148,458 - -1.8 6,148,473 + +0.5 6,148,473 + -1.4 6,148,474 - -1.0 6,148,474 - -0.4 6,148,474 - +0.3 6,148,474 - +1.0 6,148,493 + +0.0 6,148,572 + -3.0 6,148,572 + -1.4 6,148,704 - AO353_28210 0.29 +0.6 6,148,827 + AO353_28210 0.48 -0.8 6,148,828 - AO353_28210 0.48 +0.8 6,148,842 + AO353_28210 0.50 +1.2 6,148,843 - AO353_28210 0.50 +0.3 6,148,843 - AO353_28210 0.50 +0.1 6,149,039 + AO353_28210 0.80 +0.8 6,149,039 + AO353_28210 0.80 +0.6 6,149,039 + AO353_28210 0.80 +0.6 6,149,190 - -0.9 6,149,190 - -0.7 6,149,216 + -0.2 6,149,217 - -1.2 6,149,217 - -0.8 6,149,217 - -0.5 6,149,233 + +0.2 6,149,603 + AO353_28215 0.26 -0.1 6,149,604 - AO353_28215 0.26 -0.9 6,149,604 - AO353_28215 0.26 -0.9 6,149,654 + AO353_28215 0.30 -0.8 6,149,654 + AO353_28215 0.30 -1.5 6,149,725 + AO353_28215 0.35 -1.2 6,149,725 + AO353_28215 0.35 -0.1 6,149,726 - AO353_28215 0.36 -0.4 6,150,083 + AO353_28215 0.63 +0.4 6,150,084 - AO353_28215 0.63 +0.4 6,150,084 - AO353_28215 0.63 +0.7
Or see this region's nucleotide sequence